PLAZA 4.0 Monocots gene overview : Seita.J025400

Gene: Seita.J025400 (Setaria italica)

Overview

Gene Identifier: Seita.J025400
Transcript Identifier: Seita.J025400.1
Gene Type: Coding gene
Location: scaffold_47 : 9096-13020 : negative

Family

Gene family: HOM04M000031
(1754 genes in 29 species)
specific family
Subfamily: ORTHO04M000045
(820 genes in 27 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Si040877m.g
ancestorIdentifier	Si040877m.g.version2.1
ancestorIdentifier	Si040877m.version2.1
id	Seita.J025400.v2.2
pacid	32723601
tid	Seita.J025400.1.v2.2
tid	Seita.J025400.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0007165	IEA	InterPro	signal transduction

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005524	IEA	InterPro	ATP binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000719	Protein kinase domain
IPR004041	NAF domain
IPR018451	NAF/FISL domain
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.5.3	.Protein modification.phosphorylation.CAMK protein kinase superfamily.SNF1-related protein kinase (SnRK3)

No SignalP domains detected for this gene.