PLAZA 4.0 Monocots gene overview : Seita.J023100

Gene: Seita.J023100 (Setaria italica)

Overview

Gene Identifier: Seita.J023100
Transcript Identifier: Seita.J023100.1
Gene Type: Coding gene
Location: scaffold_24 : 42453-45251 : positive

Family

Gene family: HOM04M000002
(4779 genes in 29 species)
specific family
Subfamily: ORTHO04M000268
(291 genes in 25 species)
specific family
Duplication type: Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Si020913m.g
ancestorIdentifier	Si020913m.g.version2.1
ancestorIdentifier	Si020913m.version2.1
id	Seita.J023100.v2.2
pacid	32717973
tid	Seita.J023100.1.v2.2
tid	Seita.J023100.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006468	IEA	InterPro	protein phosphorylation
GO:0009620	IEA	PLAZA Integrative Orthology	response to fungus	AT1G17250
GO:0045087	IEA	PLAZA Integrative Orthology	innate immune response	AT1G17250
GO:0007165	IEA	PLAZA Integrative Orthology	signal transduction	AT1G17250

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004672	IEA	InterPro	protein kinase activity
GO:0005515	IEA	InterPro	protein binding
GO:0005524	IEA	UniProt	ATP binding
GO:0004674	IEA	UniProt	protein serine/threonine kinase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016021	IEA	UniProt	integral component of membrane

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain
IPR001611	Leucine-rich repeat
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
IPR008271	Serine/threonine-protein kinase, active site
IPR017441	Protein kinase, ATP binding site
IPR000719	Protein kinase domain
IPR011009	Protein kinase-like domain

Mapman id	Description
18.4.1.10.2	.Protein modification.phosphorylation.TKL protein kinase superfamily.LRR-X protein kinase families.protein kinase (LRR-Xb)

No SignalP domains detected for this gene.