Gene: Seita.J020800 (Setaria italica)

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Gene Identifier
Seita.J020800
Transcript Identifier
Seita.J020800.1
Gene Type
Coding gene
Location
scaffold_14 : 137228-138673 : positive

Family

Gene family
HOM04M000903
(150 genes in 24 species)
specific family
Subfamily
ORTHO04M001410
(97 genes in 24 species)
specific family
Duplication type
Tandem duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
aliasSi020845m.g
ancestorIdentifierSi020845m.g.version2.1
ancestorIdentifierSi020845m.version2.1
idSeita.J020800.v2.2
pacid32706089
tidSeita.J020800.1.v2.2
tidSeita.J020800.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0015977 IEAInterProcarbon fixation
GO:0046686 IEAPLAZA Integrative Orthologyresponse to cadmium ionATCG00490
GO:0009737 IEAPLAZA Integrative Orthologyresponse to abscisic acidATCG00490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000287 IEAInterPromagnesium ion binding
GO:0016984 IEAInterProribulose-bisphosphate carboxylase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009535 IEAPLAZA Integrative Orthologychloroplast thylakoid membraneATCG00490
GO:0009579 IEAPLAZA Integrative OrthologythylakoidATCG00490
GO:0010287 IEAPLAZA Integrative OrthologyplastoglobuleATCG00490
GO:0009941 IEAPLAZA Integrative Orthologychloroplast envelopeATCG00490
GO:0048046 IEAPLAZA Integrative OrthologyapoplastATCG00490
GO:0016020 IEAPLAZA Integrative OrthologymembraneATCG00490
GO:0005618 IEAPLAZA Integrative Orthologycell wallATCG00490
GO:0022626 IEAPLAZA Integrative Orthologycytosolic ribosomeATCG00490
GO:0009507 IEAPLAZA Integrative OrthologychloroplastATCG00490
GO:0009570 IEAPLAZA Integrative Orthologychloroplast stromaATCG00490

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminal
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal
IPR020878Ribulose bisphosphate carboxylase, large chain, active site

Mapman id Description
1.2.1.1.1Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo heterodimer.large subunit
No SignalP domains detected for this gene.