Gene: Seita.J013200 (Setaria italica)

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Gene Identifier
Seita.J013200
Transcript Identifier
Seita.J013200.1
Gene Type
Coding gene
Location
scaffold_14 : 4749-5269 : negative

Family

Gene family
HOM04M004020
(44 genes in 16 species)
specific family
Subfamily
ORTHO04M009315
(25 genes in 16 species)
specific family
Duplication type
Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
idSeita.J013200.v2.2
pacid32706051
tidSeita.J013200.1.v2.2
tidSeita.J013200.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009767 IEAInterProphotosynthetic electron transport chain
GO:0015979 IEAInterProphotosynthesis
GO:0019684 IEAInterProphotosynthesis, light reaction
GO:0009769 IEAPLAZA Integrative Orthologyphotosynthesis, light harvesting in photosystem IIATCG00580

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0020037 IEAInterProheme binding
GO:0046872 IEAInterPrometal ion binding
GO:0009055 IEAPLAZA Integrative Orthologyelectron carrier activityATCG00580

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009523 IEAInterProphotosystem II
GO:0009539 IEAInterProphotosystem II reaction center
GO:0016020 IEAInterPromembrane
GO:0016021 IEAInterProintegral component of membrane
GO:0009579 IEAPLAZA Integrative OrthologythylakoidATCG00580
GO:0009535 IEAPLAZA Integrative Orthologychloroplast thylakoid membraneATCG00580
GO:0009536 IEAPLAZA Tree-based OrthologyplastidHVU0342G0082
GO:0009654 IEAPLAZA Integrative Orthologyphotosystem II oxygen evolving complexATCG00580
GO:0009534 IEAPLAZA Integrative Orthologychloroplast thylakoidATCG00580
GO:0009507 IEAPLAZA Integrative OrthologychloroplastATCG00580

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006217Photosystem II cytochrome b559, alpha subunit
IPR003372Photosystem II PsbL
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal region
IPR013081Photosystem II cytochrome b559, N-terminal
IPR006216Photosystem II cytochrome b559, conserved site

Mapman id Description
1.1.1.2.1.5.1Photosynthesis.photophosphorylation.photosystem II.PS-II complex.reaction center complex.cytochrome b559 heterodimer.component alpha/PsbE
1.1.1.2.6Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbL
No SignalP domains detected for this gene.