PLAZA 4.0 Monocots gene overview : Seita.9G415300

Gene: Seita.9G415300 (Setaria italica)

Overview

Gene Identifier: Seita.9G415300
Transcript Identifier: Seita.9G415300.1
Gene Type: Coding gene
Location: scaffold_9 : 47236078-47244851 : negative

Family

Gene family: HOM04M000071
(1149 genes in 29 species)
specific family
Subfamily: ORTHO04M003521
(54 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Si034414m.g
ancestorIdentifier	Si034414m.g.version2.1
ancestorIdentifier	Si034414m.version2.1
id	Seita.9G415300.v2.2
pacid	32689269
tid	Seita.9G415300.1.v2.2
tid	Seita.9G415300.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006810	IEA	InterPro	transport
GO:0055085	IEA	InterPro	transmembrane transport
GO:0050790	IEA	PLAZA Integrative Orthology	regulation of catalytic activity	AT5G58270
GO:0010288	IEA	PLAZA Integrative Orthology	response to lead ion	AT5G58270
GO:0051276	IEA	PLAZA Integrative Orthology	chromosome organization	AT5G58270
GO:0006879	IEA	PLAZA Integrative Orthology	cellular iron ion homeostasis	AT4G28630
GO:0048364	IEA	PLAZA Integrative Orthology	root development	AT5G58270
GO:0006777	IEA	PLAZA Integrative Orthology	Mo-molybdopterin cofactor biosynthetic process	AT5G58270
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT5G58270
GO:0009658	IEA	PLAZA Integrative Orthology	chloroplast organization	AT5G58270
GO:0009555	IEA	PLAZA Integrative Orthology	pollen development	AT5G58270
GO:0010380	IEA	PLAZA Integrative Orthology	regulation of chlorophyll biosynthetic process	AT5G58270
GO:0040014	IEA	PLAZA Integrative Orthology	regulation of multicellular organism growth	AT5G58270

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	InterPro	ATP binding
GO:0016887	IEA	InterPro	ATPase activity
GO:0042626	IEA	InterPro	ATPase activity, coupled to transmembrane movement of substances

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016021	IEA	InterPro	integral component of membrane
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT4G28620
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT5G58270
GO:0005623	IEA	PLAZA Integrative Orthology	cell	AT4G28630
GO:0009941	IEA	PLAZA Integrative Orthology	chloroplast envelope	AT5G58270

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003439	ABC transporter-like
IPR011527	ABC transporter type 1, transmembrane domain
IPR017871	ABC transporter, conserved site
IPR003593	AAA+ ATPase domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
7.11.2.3.1	.Coenzyme metabolism.iron-sulfur cluster assembly machinery.mitochondrial ISC system.export machinery.transport protein (ATM)
24.1.3.1.1	.Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter

No SignalP domains detected for this gene.