Gene: Seita.9G109500 (Setaria italica)

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Gene Identifier
Seita.9G109500
Transcript Identifier
Seita.9G109500.2
Gene Type
Coding gene
Location
scaffold_9 : 6679674-6686518 : positive

Family

Gene family
HOM04M000332
(326 genes in 29 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
idSeita.9G109500.v2.2
pacid32691974
tidSeita.9G109500.2.v2.2
tidSeita.9G109500.2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0010089 IEAPLAZA Integrative Orthologyxylem developmentAT4G08150
GO:0045165 IEAPLAZA Integrative Orthologycell fate commitmentAT4G08150
GO:0009723 IEAPLAZA Integrative Orthologyresponse to ethyleneAT1G70510
GO:0009626 IEAPLAZA Integrative Orthologyplant-type hypersensitive responseAT1G62360
GO:0007623 IEAPLAZA Integrative Orthologycircadian rhythmAT1G62360
GO:0046686 IEAPLAZA Integrative Orthologyresponse to cadmium ionAT1G62360
GO:0010094 IEAPLAZA Integrative Orthologyspecification of carpel identityAT1G70510
GO:0010051 IEAPLAZA Integrative Orthologyxylem and phloem pattern formationAT4G08150
GO:0010073 IEAPLAZA Integrative Orthologymeristem maintenanceAT1G23380
GO:0019827 IEAPLAZA Integrative Orthologystem cell population maintenanceAT1G62360
GO:0001708 IEAPLAZA Integrative Orthologycell fate specificationAT4G08150
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT1G62360
GO:0048440 IEAPLAZA Integrative Orthologycarpel developmentAT1G62360
GO:0006544 IEAPLAZA Integrative Orthologyglycine metabolic processAT1G62360
GO:0009416 IEAPLAZA Integrative Orthologyresponse to light stimulusAT1G62360
GO:0009736 IEAPLAZA Integrative Orthologycytokinin-activated signaling pathwayAT1G70510
GO:0009934 IEAPLAZA Integrative Orthologyregulation of meristem structural organizationAT1G62360
GO:0009853 IEAPLAZA Integrative OrthologyphotorespirationAT1G62360
GO:0006563 IEAPLAZA Integrative OrthologyL-serine metabolic processAT1G62360
GO:0009691 IEAPLAZA Integrative Orthologycytokinin biosynthetic processAT1G62360

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0043565 IEAInterProsequence-specific DNA binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G62360
GO:0004372 IEAPLAZA Integrative Orthologyglycine hydroxymethyltransferase activityAT1G62360
GO:0008266 IEAPLAZA Integrative Orthologypoly(U) RNA bindingAT1G62360

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT1G62360
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT1G62360
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT1G62360
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT1G62360
GO:0010319 IEAPLAZA Integrative OrthologystromuleAT1G62360
GO:0048046 IEAPLAZA Integrative OrthologyapoplastAT1G62360
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT1G62360
GO:0009534 IEAPLAZA Integrative Orthologychloroplast thylakoidAT1G62360
GO:0022626 IEAPLAZA Integrative Orthologycytosolic ribosomeAT1G62360
GO:0009570 IEAPLAZA Integrative Orthologychloroplast stromaAT1G62360

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005541KNOX2
IPR008422Homeobox KN domain
IPR005539ELK domain
IPR005540KNOX1
IPR017970Homeobox, conserved site
IPR001356Homeobox domain
IPR009057Homeobox domain-like

Mapman id Description
15.5.3.4.RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX)
No SignalP domains detected for this gene.