PLAZA 4.0 Monocots gene overview : Seita.7G307500

Gene: Seita.7G307500 (Setaria italica)

Overview

Gene Identifier: Seita.7G307500
Transcript Identifier: Seita.7G307500.1
Gene Type: Coding gene
Location: scaffold_7 : 34503168-34504218 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Si010608m.g
ancestorIdentifier	Si010608m.g.version2.1
ancestorIdentifier	Si010608m.version2.1
id	Seita.7G307500.v2.2
pacid	32703588
tid	Seita.7G307500.1.v2.2
tid	Seita.7G307500.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010118	IEA	PLAZA Integrative Orthology	stomatal movement	AT1G08810
GO:0001666	IEA	PLAZA Integrative Orthology	response to hypoxia	AT3G28910
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT1G08810
GO:0009617	IEA	PLAZA Integrative Orthology	response to bacterium	AT3G28910
GO:0009739	IEA	PLAZA Integrative Orthology	response to gibberellin	AT3G28910
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT3G28910
GO:0009414	IEA	PLAZA Integrative Orthology	response to water deprivation	AT1G08810
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT3G28910
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT1G08810
GO:0009626	IEA	PLAZA Integrative Orthology	plant-type hypersensitive response	AT3G28910
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT1G08810
GO:0042761	IEA	PLAZA Integrative Orthology	very long-chain fatty acid biosynthetic process	AT3G28910
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT1G08810

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT3G28910
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT1G08810

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT3G28910

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.