PLAZA 4.0 Monocots gene overview : Seita.6G169900

Gene: Seita.6G169900 (Setaria italica)

Overview

Gene Identifier: Seita.6G169900
Transcript Identifier: Seita.6G169900.1
Gene Type: Coding gene
Location: scaffold_6 : 29354302-29356674 : positive

Family

Gene family: HOM04M000008
(3579 genes in 29 species)
specific family
Subfamily: ORTHO04M000003
(3095 genes in 29 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Si015420m.g
ancestorIdentifier	Si015420m.g.version2.1
ancestorIdentifier	Si015420m.version2.1
id	Seita.6G169900.v2.2
pacid	32699718
tid	Seita.6G169900.1.v2.2
tid	Seita.6G169900.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	IEA	InterPro	transcription factor activity, sequence-specific DNA binding
GO:0003677	IEA	InterPro	DNA binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001471	AP2/ERF domain
IPR016177	DNA-binding domain

Mapman id	Description
15.5.7.1	.RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF)

No SignalP domains detected for this gene.