Gene: Seita.6G072700 (Setaria italica)

Overview top

Gene Identifier
Seita.6G072700
Transcript Identifier
Seita.6G072700.1
Gene Type
Coding gene
Location
scaffold_6 : 6485458-6489744 : positive

Family

Gene family
HOM04M000194
(476 genes in 27 species)
specific family
Subfamily
ORTHO04M000128
(433 genes in 27 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
aliasSi013279m.g
ancestorIdentifierSi013279m.g.version2.1
ancestorIdentifierSi013279m.version2.1
idSeita.6G072700.v2.2
pacid32698909
tidSeita.6G072700.1.v2.2
tidSeita.6G072700.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0090627 IEAPLAZA Integrative Orthologyplant epidermal cell differentiationAT4G21750
GO:0031047 IEAPLAZA Tree-based Orthologygene silencing by RNAAT4G25530
GO:0048497 IEAPLAZA Integrative Orthologymaintenance of floral organ identityAT4G04890
GO:0043481 IEAPLAZA Tree-based Orthologyanthocyanin accumulation in tissues in response to UV lightAT4G00730
GO:0009909 IEAPLAZA Tree-based Orthologyregulation of flower developmentAT4G25530
GO:0009957 IEAPLAZA Tree-based Orthologyepidermal cell fate specificationAT1G79840
GO:0009913 IEAPLAZA Integrative Orthologyepidermal cell differentiationAT4G04890
GO:0006349 IEAPLAZA Tree-based Orthologyregulation of gene expression by genetic imprintingAT4G25530
GO:0009827 IEAPLAZA Tree-based Orthologyplant-type cell wall modificationAT4G00730
GO:0048364 IEAPLAZA Tree-based Orthologyroot developmentAT4G00730
GO:0009828 IEAPLAZA Tree-based Orthologyplant-type cell wall looseningAT1G73360
GO:0048825 IEAPLAZA Integrative Orthologycotyledon developmentAT4G04890
GO:0009911 IEAPLAZA Tree-based Orthologypositive regulation of flower developmentAT4G25530
GO:0042335 IEAPLAZA Tree-based Orthologycuticle developmentAT4G00730
GO:0009845 IEAPLAZA Integrative Orthologyseed germinationAT4G04890
GO:0048765 IEAPLAZA Tree-based Orthologyroot hair cell differentiationAT4G00730
GO:0010090 IEAPLAZA Integrative Orthologytrichome morphogenesisAT1G05230
GO:0010091 IEAPLAZA Tree-based Orthologytrichome branchingAT1G73360
GO:0010062 IEAPLAZA Tree-based Orthologynegative regulation of trichoblast fate specificationAT1G79840

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008289 IEAInterProlipid binding
GO:0003677 IEAInterProDNA binding
GO:0043565 IEAInterProsequence-specific DNA binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT4G04890
GO:0003700 IEAPLAZA Tree-based Orthologytranscription factor activity, sequence-specific DNA bindingAT1G73360
GO:0000976 IEAPLAZA Tree-based Orthologytranscription regulatory region sequence-specific DNA bindingAT1G73360
GO:0042803 IEAPLAZA Tree-based Orthologyprotein homodimerization activityAT4G25530

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT4G04890

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR023393START-like domain
IPR002913START domain
IPR001356Homeobox domain
IPR017970Homeobox, conserved site
IPR009057Homeobox domain-like

Mapman id Description
15.5.3.3.RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP IV)
No SignalP domains detected for this gene.