PLAZA 4.0 Monocots gene overview : Seita.3G350800

Gene: Seita.3G350800 (Setaria italica)

Overview

Gene Identifier: Seita.3G350800
Transcript Identifier: Seita.3G350800.1
Gene Type: Coding gene
Location: scaffold_3 : 45041587-45044061 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Si024786m.g
ancestorIdentifier	Si024786m.g.version2.1
ancestorIdentifier	Si024786m.version2.1
id	Seita.3G350800.v2.2
pacid	32711904
tid	Seita.3G350800.1.v2.2
tid	Seita.3G350800.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:2000652	IEA	PLAZA Integrative Orthology	regulation of secondary cell wall biogenesis	AT3G08500
GO:1901348	IEA	PLAZA Integrative Orthology	positive regulation of secondary cell wall biogenesis	AT5G12870
GO:0009834	IEA	PLAZA Integrative Orthology	plant-type secondary cell wall biogenesis	AT5G12870
GO:0050832	IEA	PLAZA Integrative Orthology	defense response to fungus	AT5G12870
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT5G12870
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT3G08500

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT3G08500
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT5G12870

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT5G12870

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.