Gene: Seita.3G238500 (Setaria italica)

Overview top

Gene Identifier
Seita.3G238500
Transcript Identifier
Seita.3G238500.1
Gene Type
Coding gene
Location
scaffold_3 : 20170193-20174712 : negative

Family

Gene family
HOM04M000365
(308 genes in 29 species)
specific family
Subfamily
ORTHO04M000348
(251 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
aliasSi023009m.g
ancestorIdentifierSi023009m.g.version2.1
ancestorIdentifierSi023009m.version2.1
idSeita.3G238500.v2.2
pacid32711090
tidSeita.3G238500.1.v2.2
tidSeita.3G238500.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0009414 IEAPLAZA Integrative Orthologyresponse to water deprivationAT5G20510
GO:0048767 IEAPLAZA Integrative Orthologyroot hair elongationAT2G02470
GO:0016036 IEAPLAZA Integrative Orthologycellular response to phosphate starvationAT2G02470
GO:0055065 IEAPLAZA Integrative Orthologymetal ion homeostasisAT2G02470
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT5G20510

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0042393 IEAInterProhistone binding
GO:0035064 IEAPLAZA Integrative Orthologymethylated histone bindingAT5G26210
GO:0003714 IEAPLAZA Integrative Orthologytranscription corepressor activityAT5G20510
GO:0003677 IEAPLAZA Integrative OrthologyDNA bindingAT5G20510

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT5G26210
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G26210

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR021998Alfin
IPR019787Zinc finger, PHD-finger
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR011011Zinc finger, FYVE/PHD-type

Mapman id Description
15.5.8.RNA biosynthesis.transcriptional regulation.transcription factor (Alfin)
No SignalP domains detected for this gene.