PLAZA 4.0 Monocots gene overview : Seita.2G289900

Gene: Seita.2G289900 (Setaria italica)

Overview

Gene Identifier: Seita.2G289900
Transcript Identifier: Seita.2G289900.1
Gene Type: Coding gene
Location: scaffold_2 : 38547953-38548794 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Si030943m.g
ancestorIdentifier	Si030943m.g.version2.1
id	Seita.2G289900.v2.2
pacid	32719983
tid	Seita.2G289900.1.v2.2
tid	Seita.2G289900.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:1903086	IEA	PLAZA Integrative Orthology	negative regulation of sinapate ester biosynthetic process	AT4G38620
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT1G22640
GO:0080086	IEA	PLAZA Integrative Orthology	stamen filament development	AT1G22640
GO:1900384	IEA	PLAZA Integrative Orthology	regulation of flavonol biosynthetic process	AT2G16720
GO:0009892	IEA	PLAZA Integrative Orthology	negative regulation of metabolic process	AT1G22640
GO:0009611	IEA	PLAZA Integrative Orthology	response to wounding	AT1G22640
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT4G38620
GO:0046686	IEA	PLAZA Integrative Orthology	response to cadmium ion	AT4G34990
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT4G38620
GO:0009740	IEA	PLAZA Integrative Orthology	gibberellic acid mediated signaling pathway	AT1G22640
GO:0009867	IEA	PLAZA Integrative Orthology	jasmonic acid mediated signaling pathway	AT1G22640
GO:0009800	IEA	PLAZA Integrative Orthology	cinnamic acid biosynthetic process	AT1G22640
GO:0009723	IEA	PLAZA Integrative Orthology	response to ethylene	AT4G34990
GO:0009739	IEA	PLAZA Integrative Orthology	response to gibberellin	AT4G09460
GO:0009737	IEA	PLAZA Integrative Orthology	response to abscisic acid	AT1G22640
GO:0045892	IEA	PLAZA Integrative Orthology	negative regulation of transcription, DNA-templated	AT4G38620
GO:0048443	IEA	PLAZA Integrative Orthology	stamen development	AT1G22640
GO:0010224	IEA	PLAZA Integrative Orthology	response to UV-B	AT4G38620
GO:2000762	IEA	PLAZA Integrative Orthology	regulation of phenylpropanoid metabolic process	AT4G38620

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT1G22640
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT4G38620

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.