PLAZA 4.0 Monocots gene overview : SMO367G0639

Gene: SMO367G0639 (Selaginella moellendorffii)

Overview

Gene Identifier: SMO367G0639
Transcript Identifier: SMO367G0639.1
Gene Type: Coding gene
Location: scaffold_0 : 363885-365034 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	estExt_fgenesh2_pg.C_00034
id	437219.v1
name	437219
pacid	15416612
tid	437219.v1.91

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:2000652	IEA	PLAZA Integrative Orthology	regulation of secondary cell wall biogenesis	AT1G63910
GO:0010089	IEA	PLAZA Integrative Orthology	xylem development	AT1G09540
GO:0050832	IEA	PLAZA Integrative Orthology	defense response to fungus	AT5G12870
GO:0010214	IEA	PLAZA Integrative Orthology	seed coat development	AT1G09540
GO:0001944	IEA	PLAZA Integrative Orthology	vasculature development	AT1G09540
GO:0010119	IEA	PLAZA Integrative Orthology	regulation of stomatal movement	AT1G09540
GO:0045893	IEA	PLAZA Integrative Orthology	positive regulation of transcription, DNA-templated	AT1G63910
GO:0045892	IEA	PLAZA Integrative Orthology	negative regulation of transcription, DNA-templated	AT5G26660
GO:0009739	IEA	PLAZA Integrative Orthology	response to gibberellin	AT3G13890
GO:0048364	IEA	PLAZA Integrative Orthology	root development	AT1G09540
GO:0009733	IEA	PLAZA Integrative Orthology	response to auxin	AT1G09540
GO:1901348	IEA	PLAZA Integrative Orthology	positive regulation of secondary cell wall biogenesis	AT5G12870
GO:0009834	IEA	PLAZA Integrative Orthology	plant-type secondary cell wall biogenesis	AT3G13890
GO:0009901	IEA	PLAZA Integrative Orthology	anther dehiscence	AT3G13890
GO:0009751	IEA	PLAZA Integrative Orthology	response to salicylic acid	AT1G74430
GO:0009753	IEA	PLAZA Integrative Orthology	response to jasmonic acid	AT1G74430
GO:0006355	IEA	PLAZA Integrative Orthology	regulation of transcription, DNA-templated	AT1G63910
GO:1901430	IEA	PLAZA Integrative Orthology	positive regulation of syringal lignin biosynthetic process	AT1G63910
GO:0009651	IEA	PLAZA Integrative Orthology	response to salt stress	AT1G18710

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding
GO:0003700	IEA	PLAZA Integrative Orthology	transcription factor activity, sequence-specific DNA binding	AT1G09540
GO:0043565	IEA	PLAZA Integrative Orthology	sequence-specific DNA binding	AT3G08500
GO:0044212	IEA	PLAZA Integrative Orthology	transcription regulatory region DNA binding	AT4G01680

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	AT1G18710
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G63910

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.