PLAZA 4.0 Monocots gene overview : SMO266G0051

Gene: SMO266G0051 (Selaginella moellendorffii)

Overview

Gene Identifier: SMO266G0051
Transcript Identifier: SMO266G0051.1
Gene Type: Coding gene
Location: scaffold_68 : 604776-606302 : negative

Family

Gene family: HOM04M000001
(8521 genes in 28 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	gw1.68.49.1
id	11063.v1
name	11063
pacid	15421766
tid	11063.v1.91

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain
IPR002885	Pentatricopeptide repeat

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.