PLAZA 4.0 Monocots gene overview : SMO197G0031

Gene: SMO197G0031 (Selaginella moellendorffii)

Overview

Gene Identifier: SMO197G0031
Transcript Identifier: SMO197G0031.1
Gene Type: Coding gene
Location: scaffold_46 : 965686-966897 : negative

Family

Gene family: HOM04M000052
(1376 genes in 27 species)
specific family
Subfamily: ORTHO04M003209
(58 genes in 26 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	e_gw1.46.282.1
id	113376.v1
name	113376
pacid	15415620
tid	113376.v1.91

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008356	IEA	InterPro	asymmetric cell division
GO:0009956	IEA	InterPro	radial pattern formation
GO:0048366	IEA	InterPro	leaf development
GO:0045930	IEA	PLAZA Integrative Orthology	negative regulation of mitotic cell cycle	AT4G37650
GO:0055072	IEA	PLAZA Integrative Orthology	iron ion homeostasis	AT4G37650

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	IEA	InterPro	transcription factor activity, sequence-specific DNA binding
GO:0043565	IEA	InterPro	sequence-specific DNA binding
GO:0005515	IEA	PLAZA Integrative Orthology	protein binding	AT4G37650

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	InterPro	nucleus

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR030019	Protein short-root
IPR005202	Transcription factor GRAS

Mapman id	Description
15.5.12	.RNA biosynthesis.transcriptional regulation.transcription factor (GRAS)
26.3.1.4	.External stimuli response.gravity.sensing and signalling.transcription factor (SHR)

No SignalP domains detected for this gene.