Gene: SMO112G0037 (Selaginella moellendorffii)

Overview top

Gene Identifier
SMO112G0037
Transcript Identifier
SMO112G0037.1
Gene Type
Coding gene
Location
scaffold_16 : 2310516-2313416 : positive

Family

Gene family
HOM04M003846
(45 genes in 29 species)
specific family
Subfamily
ORTHO04M005193
(42 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
aliasestExt_Genewise1Plus.C_160755
id172051.v1
name172051
pacid15408779
tid172051.v1.91

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000398 IEAInterPromRNA splicing, via spliceosome
GO:0006396 IEAInterProRNA processing
GO:2000630 IEAPLAZA Integrative Orthologypositive regulation of miRNA metabolic processAT4G03430
GO:0009845 IEAPLAZA Integrative Orthologyseed germinationAT4G03430
GO:0080188 IEAPLAZA Integrative OrthologyRNA-directed DNA methylationAT4G03430
GO:2000636 IEAPLAZA Integrative Orthologypositive regulation of primary miRNA processingAT4G03430
GO:0019252 IEAPLAZA Tree-based Orthologystarch biosynthetic processLOC_Os10g35550
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT4G03430
GO:0005976 IEAPLAZA Tree-based Orthologypolysaccharide metabolic processLOC_Os10g35550

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus
GO:0009568 IEAPLAZA Tree-based Orthologyamyloplast starch grainLOC_Os10g35550
GO:0005681 IEAPLAZA Integrative Orthologyspliceosomal complexAT4G03430
GO:0015030 IEAPLAZA Integrative OrthologyCajal bodyAT4G03430

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011990Tetratricopeptide-like helical domain
IPR027108Pre-mRNA-processing factor 6/Prp1/STA1
IPR010491PRP1 splicing factor, N-terminal
IPR013026Tetratricopeptide repeat-containing domain
IPR019734Tetratricopeptide repeat
IPR003107HAT (Half-A-TPR) repeat

Mapman id Description
16.4.1.4.5.RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF6/PRP1/STA1)
No SignalP domains detected for this gene.