PLAZA 4.0 Monocots gene overview : Pp3c5_26840

Gene: Pp3c5_26840 (Physcomitrella patens)

Overview

Gene Identifier: Pp3c5_26840
Transcript Identifier: Pp3c5_26840V3.3
Gene Type: Coding gene
Location: Chr05 : 18950798-18952100 : positive

Family

Gene family: HOM04M105405
(orphan gene)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Phpat.005G097900
alias	Pp1s154_114V6
alias	Phypa_87160
name	Pp3c5_26840V3.3

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

No InterPro domains detected for this gene.

Mapman id	Description
35.2	not assigned.not annotated

No SignalP domains detected for this gene.