Gene: Pp3c4_540 (Physcomitrella patens)

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Gene Identifier
Pp3c4_540
Transcript Identifier
Pp3c4_540V3.1
Gene Type
Coding gene
Location
Chr04 : 287321-290480 : negative

Family

Gene family
HOM04M000038
(1510 genes in 29 species)
specific family
Subfamily
ORTHO04M000013
(1412 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
aliasPhypa_94754
aliasPhpat.004G002000
aliasPp1s267_56V6
namePp3c4_540V3.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0045944 IEAInterPropositive regulation of transcription from RNA polymerase II promoter
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0010047 IEAPLAZA Integrative Orthologyfruit dehiscenceAT5G13790
GO:0010048 IEAPLAZA Integrative Orthologyvernalization responseAT5G65080
GO:2000028 IEAPLAZA Integrative Orthologyregulation of photoperiodism, floweringAT5G65080
GO:0010167 IEAPLAZA Integrative Orthologyresponse to nitrateAT2G14210
GO:2000029 IEAPLAZA Integrative Orthologyregulation of proanthocyanidin biosynthetic processAT5G23260
GO:0048510 IEAPLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phaseAT4G22950
GO:0009739 IEAPLAZA Integrative Orthologyresponse to gibberellinAT2G45660
GO:0009266 IEAPLAZA Integrative Orthologyresponse to temperature stimulusAT2G22540
GO:0010093 IEAPLAZA Integrative Orthologyspecification of floral organ identityAT1G24260
GO:2000012 IEAPLAZA Integrative Orthologyregulation of auxin polar transportAT4G11880
GO:0048587 IEAPLAZA Integrative Orthologyregulation of short-day photoperiodism, floweringAT5G65080
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT2G45660
GO:0009735 IEAPLAZA Integrative Orthologyresponse to cytokininAT3G30260
GO:0009933 IEAPLAZA Integrative Orthologymeristem structural organizationAT1G69120
GO:0060862 IEAPLAZA Integrative Orthologynegative regulation of floral organ abscissionAT5G13790
GO:0042752 IEAPLAZA Integrative Orthologyregulation of circadian rhythmAT5G10140
GO:0048578 IEAPLAZA Integrative Orthologypositive regulation of long-day photoperiodism, floweringAT2G22630
GO:0060867 IEAPLAZA Integrative Orthologyfruit abscissionAT5G13790
GO:0009611 IEAPLAZA Integrative Orthologyresponse to woundingAT5G15800
GO:0080155 IEAPLAZA Integrative Orthologyregulation of double fertilization forming a zygote and endospermAT4G09960
GO:0010082 IEAPLAZA Integrative Orthologyregulation of root meristem growthAT4G11880
GO:0010440 IEAPLAZA Integrative Orthologystomatal lineage progressionAT3G57230
GO:0008360 IEAPLAZA Integrative Orthologyregulation of cell shapeAT5G23260
GO:0010221 IEAPLAZA Integrative Orthologynegative regulation of vernalization responseAT5G65050
GO:0010227 IEAPLAZA Integrative Orthologyfloral organ abscissionAT5G13790
GO:0010228 IEAPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT1G71692
GO:0071249 IEAPLAZA Integrative Orthologycellular response to nitrateAT2G14210
GO:0010468 IEAPLAZA Integrative Orthologyregulation of gene expressionAT3G61120
GO:0048530 IEAPLAZA Integrative Orthologyfruit morphogenesisAT1G31140
GO:0048574 IEAPLAZA Integrative Orthologylong-day photoperiodism, floweringAT3G57230
GO:0048497 IEAPLAZA Integrative Orthologymaintenance of floral organ identityAT4G18960
GO:0071365 IEAPLAZA Integrative Orthologycellular response to auxin stimulusAT5G13790
GO:0048577 IEAPLAZA Integrative Orthologynegative regulation of short-day photoperiodism, floweringAT3G57390
GO:0071486 IEAPLAZA Integrative Orthologycellular response to high light intensityAT5G15800
GO:0048527 IEAPLAZA Integrative Orthologylateral root developmentAT2G14210
GO:0009838 IEAPLAZA Integrative OrthologyabscissionAT5G62165
GO:0007584 IEAPLAZA Integrative Orthologyresponse to nutrientAT2G14210
GO:1903338 IEAPLAZA Integrative Orthologyregulation of cell wall organization or biogenesisAT4G09960
GO:0009644 IEAPLAZA Integrative Orthologyresponse to high light intensityAT5G15800
GO:0080187 IEAPLAZA Integrative Orthologyfloral organ senescenceAT5G62165
GO:0010150 IEAPLAZA Integrative Orthologyleaf senescenceAT5G62165
GO:2000692 IEAPLAZA Integrative Orthologynegative regulation of seed maturationAT5G13790
GO:0010154 IEAPLAZA Integrative Orthologyfruit developmentAT5G60910
GO:0010076 IEAPLAZA Integrative Orthologymaintenance of floral meristem identityAT2G22540
GO:0010077 IEAPLAZA Integrative Orthologymaintenance of inflorescence meristem identityAT2G45660
GO:0001708 IEAPLAZA Integrative Orthologycell fate specificationAT1G24260
GO:0080060 IEAPLAZA Integrative Orthologyintegument developmentAT1G31140
GO:0048481 IEAPLAZA Integrative Orthologyplant ovule developmentAT3G61120
GO:0048442 IEAPLAZA Integrative Orthologysepal developmentAT2G03710
GO:0010214 IEAPLAZA Integrative Orthologyseed coat developmentAT4G09960
GO:0000060 IEAPLAZA Integrative Orthologyprotein import into nucleus, translocationAT2G45660
GO:0048443 IEAPLAZA Integrative Orthologystamen developmentAT4G18960
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT4G18960
GO:0030308 IEAPLAZA Integrative Orthologynegative regulation of cell growthAT1G31140
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT1G69120
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT1G24260
GO:0009909 IEAPLAZA Integrative Orthologyregulation of flower developmentAT5G62165
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT2G22540
GO:0071492 IEAPLAZA Integrative Orthologycellular response to UV-AAT5G15800
GO:0048440 IEAPLAZA Integrative Orthologycarpel developmentAT4G18960
GO:0048441 IEAPLAZA Integrative Orthologypetal developmentAT2G03710
GO:0048364 IEAPLAZA Integrative Orthologyroot developmentAT1G71692
GO:0009910 IEAPLAZA Integrative Orthologynegative regulation of flower developmentAT5G65080
GO:0009911 IEAPLAZA Integrative Orthologypositive regulation of flower developmentAT2G45650
GO:0045487 IEAPLAZA Integrative Orthologygibberellin catabolic processAT5G13790
GO:0048437 IEAPLAZA Integrative Orthologyfloral organ developmentAT2G45650
GO:0048316 IEAPLAZA Integrative Orthologyseed developmentAT4G09960
GO:0048833 IEAPLAZA Integrative Orthologyspecification of floral organ numberAT1G24260
GO:0009555 IEAPLAZA Integrative Orthologypollen developmentAT3G61120
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT5G13790
GO:0048438 IEAPLAZA Integrative Orthologyfloral whorl developmentAT2G22540
GO:0010582 IEAPLAZA Integrative Orthologyfloral meristem determinacyAT2G22540
GO:0010262 IEAPLAZA Integrative Orthologysomatic embryogenesisAT5G13790
GO:0010220 IEAPLAZA Integrative Orthologypositive regulation of vernalization responseAT4G24540

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000977 IEAInterProRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003677 IEAInterProDNA binding
GO:0046983 IEAInterProprotein dimerization activity
GO:0003700 IEAInterProtranscription factor activity, sequence-specific DNA binding
GO:0008134 IEAPLAZA Integrative Orthologytranscription factor bindingAT3G57230
GO:0042803 IEAPLAZA Integrative Orthologyprotein homodimerization activityAT3G57230
GO:0043565 IEAPLAZA Integrative Orthologysequence-specific DNA bindingAT4G24540
GO:0044212 IEAPLAZA Integrative Orthologytranscription regulatory region DNA bindingAT4G11880
GO:0016168 IEAPLAZA Integrative Orthologychlorophyll bindingAT5G15800
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT3G61120
GO:0000900 IEAPLAZA Integrative Orthologytranslation repressor activity, nucleic acid bindingAT2G22540
GO:0046982 IEAPLAZA Integrative Orthologyprotein heterodimerization activityAT1G69120

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAInterPronucleus
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT2G45660
GO:0009535 IEAPLAZA Integrative Orthologychloroplast thylakoid membraneAT5G15800
GO:0043234 IEAPLAZA Integrative Orthologyprotein complexAT5G10140
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT5G65070

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR033896MADS MEF2-like
IPR002100Transcription factor, MADS-box
IPR002487Transcription factor, K-box

Mapman id Description
15.5.14.RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)
No SignalP domains detected for this gene.