PLAZA 4.0 Monocots gene overview : Pp3c27_850

Gene: Pp3c27_850 (Physcomitrella patens)

Overview

Gene Identifier: Pp3c27_850
Transcript Identifier: Pp3c27_850V3.1
Gene Type: Coding gene
Location: Chr27 : 500175-508238 : positive

Family

Gene family: HOM04M000020
(1960 genes in 29 species)
specific family
Subfamily: ORTHO04M001874
(83 genes in 27 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Phpat.027G003200
name	Pp3c27_850V3.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

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View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007018	IEA	InterPro	microtubule-based movement
GO:0032886	IEA	InterPro	regulation of microtubule-based process
GO:0048364	IEA	InterPro	root development
GO:0048768	IEA	PLAZA Integrative Orthology	root hair cell tip growth	AT3G54870
GO:0046777	IEA	PLAZA Integrative Orthology	protein autophosphorylation	AT1G01950
GO:0048765	IEA	PLAZA Integrative Orthology	root hair cell differentiation	AT3G54870
GO:0006468	IEA	PLAZA Integrative Orthology	protein phosphorylation	AT1G01950
GO:0071215	IEA	PLAZA Integrative Orthology	cellular response to abscisic acid stimulus	AT1G01950
GO:0031110	IEA	PLAZA Integrative Orthology	regulation of microtubule polymerization or depolymerization	AT3G54870
GO:0034613	IEA	PLAZA Integrative Orthology	cellular protein localization	AT1G01950

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003777	IEA	InterPro	microtubule motor activity
GO:0005524	IEA	InterPro	ATP binding
GO:0008017	IEA	InterPro	microtubule binding
GO:0005515	IEA	InterPro	protein binding
GO:0005488	IEA	InterPro	binding
GO:0004672	IEA	PLAZA Integrative Orthology	protein kinase activity	AT1G01950
GO:0004674	IEA	PLAZA Integrative Orthology	protein serine/threonine kinase activity	AT1G01950
GO:0031625	IEA	PLAZA Integrative Orthology	ubiquitin protein ligase binding	AT1G12430
GO:0003779	IEA	PLAZA Integrative Orthology	actin binding	AT3G54870

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009574	IEA	PLAZA Integrative Orthology	preprophase band	AT1G12430
GO:0005773	IEA	PLAZA Integrative Orthology	vacuole	AT1G12430
GO:0005886	IEA	PLAZA Integrative Orthology	plasma membrane	AT1G12430
GO:0005874	IEA	PLAZA Integrative Orthology	microtubule	AT3G54870
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G01950
GO:0009506	IEA	PLAZA Integrative Orthology	plasmodesma	AT1G12430
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	AT1G01950

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001752	Kinesin motor domain
IPR011989	Armadillo-like helical
IPR033291	Armadillo repeat-containing kinesin-like protein 1/2
IPR000225	Armadillo
IPR019821	Kinesin motor domain, conserved site
IPR016024	Armadillo-type fold
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
20.1.3.13	.Cytoskeleton organisation.microtubular network.Kinesin microtubule-based motor protein activities.motor protein (Kinesin-U)

No SignalP domains detected for this gene.