Gene: Pp3c26_13950 (Physcomitrella patens)

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Gene Identifier
Pp3c26_13950
Transcript Identifier
Pp3c26_13950V3.1
Gene Type
Coding gene
Location
Chr26 : 8746241-8747750 : positive

Family

Gene family
HOM04M000014
(2446 genes in 27 species)
specific family
Subfamily
ORTHO04M000022
(1115 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
aliasPp1s6_458V6
aliasPhpat.026G050200
aliasPhypa_53615
namePp3c26_13950V3.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0048829 IEAInterProroot cap development
GO:0010047 IEAPLAZA Integrative Orthologyfruit dehiscenceAT2G46770
GO:0010089 IEAPLAZA Integrative Orthologyxylem developmentAT5G62380
GO:0010981 IEAPLAZA Integrative Orthologyregulation of cell wall macromolecule metabolic processAT5G62380
GO:0010200 IEAPLAZA Integrative Orthologyresponse to chitinAT2G18060
GO:0010628 IEAPLAZA Integrative Orthologypositive regulation of gene expressionAT1G33280
GO:0071365 IEAPLAZA Integrative Orthologycellular response to auxin stimulusAT1G71930
GO:0009737 IEAPLAZA Integrative Orthologyresponse to abscisic acidAT5G62380
GO:0003002 IEAPLAZA Integrative OrthologyregionalizationAT1G79580
GO:0009901 IEAPLAZA Integrative Orthologyanther dehiscenceAT3G61910
GO:0009620 IEAPLAZA Integrative Orthologyresponse to fungusAT5G62380
GO:0009741 IEAPLAZA Integrative Orthologyresponse to brassinosteroidAT5G62380
GO:0010455 IEAPLAZA Integrative Orthologypositive regulation of cell fate commitmentAT1G79580
GO:0050832 IEAPLAZA Integrative Orthologydefense response to fungusAT1G71930
GO:0009809 IEAPLAZA Integrative Orthologylignin biosynthetic processAT2G46770
GO:0045893 IEAPLAZA Integrative Orthologypositive regulation of transcription, DNA-templatedAT5G62380
GO:0045491 IEAPLAZA Integrative Orthologyxylan metabolic processAT5G62380
GO:1990110 IEAPLAZA Integrative Orthologycallus formationAT2G18060
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT5G62380
GO:0048759 IEAPLAZA Integrative Orthologyxylem vessel member cell differentiationAT1G12260
GO:0009834 IEAPLAZA Integrative Orthologyplant-type secondary cell wall biogenesisAT3G61910
GO:0009735 IEAPLAZA Integrative Orthologyresponse to cytokininAT5G62380
GO:1901348 IEAPLAZA Integrative Orthologypositive regulation of secondary cell wall biogenesisAT1G12260
GO:0043068 IEAPLAZA Integrative Orthologypositive regulation of programmed cell deathAT5G62380
GO:0090059 IEAPLAZA Integrative Orthologyprotoxylem developmentAT1G71930
GO:0090058 IEAPLAZA Integrative Orthologymetaxylem developmentAT5G62380

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G12260
GO:0042803 IEAPLAZA Integrative Orthologyprotein homodimerization activityAT5G62380
GO:0042802 IEAPLAZA Integrative Orthologyidentical protein bindingAT1G71930
GO:0046982 IEAPLAZA Integrative Orthologyprotein heterodimerization activityAT1G71930
GO:0003700 IEAPLAZA Integrative Orthologytranscription factor activity, sequence-specific DNA bindingAT5G62380
GO:0043565 IEAPLAZA Integrative Orthologysequence-specific DNA bindingAT4G36160
GO:0044212 IEAPLAZA Integrative Orthologytranscription regulatory region DNA bindingAT2G18060

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT3G61910
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT4G36160
GO:0009531 IEAPLAZA Integrative Orthologysecondary cell wallAT5G62380

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR033518Protein SOMBRERO
IPR003441NAC domain

Mapman id Description
15.5.17.RNA biosynthesis.transcriptional regulation.transcription factor (NAC)
No SignalP domains detected for this gene.