PLAZA 4.0 Monocots gene overview : Pp3c23_21620

Gene: Pp3c23_21620 (Physcomitrella patens)

Overview

Gene Identifier: Pp3c23_21620
Transcript Identifier: Pp3c23_21620V3.1
Gene Type: Coding gene
Location: Chr23 : 14353685-14354769 : negative

Family

Gene family: HOM04M000607
(205 genes in 29 species)
specific family
Subfamily: ORTHO04M006302
(37 genes in 26 species)
specific family
Duplication type: Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
alias	Phpat.023G077200
alias	Phypa_151365
alias	Pp1s335_29V6
name	Pp3c23_21620V3.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007017	IEA	InterPro	microtubule-based process

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0030286	IEA	InterPro	dynein complex
GO:0005875	IEA	InterPro	microtubule associated complex

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001372	Dynein light chain, type 1/2
IPR019763	Dynein light chain, type 1/2, conserved site

Mapman id	Description
20.1.4.3	.Cytoskeleton organisation.microtubular network.Dynein microtubule-based motor protein complex.light chain

No SignalP domains detected for this gene.