Gene: Pp3c17_4050 (Physcomitrella patens)

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Gene Identifier
Pp3c17_4050
Transcript Identifier
Pp3c17_4050V3.3
Gene Type
Coding gene
Location
Chr17 : 3247483-3248680 : negative

Family

Gene family
HOM04M000040
(1490 genes in 29 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
aliasPhpat.017G012800
namePp3c17_4050V3.3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT5G04280
GO:0009631 IEAPLAZA Integrative Orthologycold acclimationAT3G26420
GO:0009414 IEAPLAZA Integrative Orthologyresponse to water deprivationAT5G04280
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT5G04280
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT5G04280
GO:0048026 IEAPLAZA Integrative Orthologypositive regulation of mRNA splicing, via spliceosomeAT5G04280

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0008270 IEAInterProzinc ion binding
GO:0031490 IEAPLAZA Integrative Orthologychromatin DNA bindingAT5G04280
GO:0003682 IEAPLAZA Integrative Orthologychromatin bindingAT5G04280
GO:0000166 IEAPLAZA Integrative Orthologynucleotide bindingAT3G26420
GO:0003723 IEAPLAZA Integrative OrthologyRNA bindingAT5G04280
GO:0003729 IEAPLAZA Integrative OrthologymRNA bindingAT5G04280

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016607 IEAPLAZA Integrative Orthologynuclear speckAT1G60650
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT5G04280
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G04280
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT3G26420
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT3G26420

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001878Zinc finger, CCHC-type
IPR000504RNA recognition motif domain

Mapman id Description
16.7.2.RNA processing.RNA chaperone activities.RNA chaperone (RZ1|GR-RBP)
No SignalP domains detected for this gene.