Gene: Potri.012G039400 (Populus trichocarpa)

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Gene Identifier
Potri.012G039400
Transcript Identifier
Potri.012G039400.1
Gene Type
Coding gene
Location
Chr12 : 3488214-3489295 : positive

Family

Gene family
HOM04M000112
(760 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
similar to MYB transcription factor R2R3 type. [ORG:Populus tremula x Populus tremuloides]; [ co-ortholog (1of2) of At1g17950, At1g73410, At5g17800, CAD98761, ]

Identifiers

Type Value
aliasPt-MYB.41
aliaseugene3.00120054
aliasMYB167
aliasPOPTR_0012s03650
idPotri.012G039400.v3.1
pacid37281859
tidPotri.012G039400.1.v3.1
tidPotri.012G039400.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0030154 IBAUniProtcell differentiation
GO:0006357 IBAUniProtregulation of transcription from RNA polymerase II promoter
GO:0009414 IEAPLAZA Integrative Orthologyresponse to water deprivationAT1G17950
GO:2000652 IEAPLAZA Integrative Orthologyregulation of secondary cell wall biogenesisAT1G73410
GO:1901348 IEAPLAZA Integrative Orthologypositive regulation of secondary cell wall biogenesisAT1G17950
GO:0009834 IEAPLAZA Integrative Orthologyplant-type secondary cell wall biogenesisAT1G17950
GO:1901347 IEAPLAZA Integrative Orthologynegative regulation of secondary cell wall biogenesisAT1G17950
GO:0009737 IEAPLAZA Integrative Orthologyresponse to abscisic acidAT1G17950
GO:1902074 IEAPLAZA Integrative Orthologyresponse to saltAT1G17950

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0000981 IBAUniProtRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0043565 IBAUniProtsequence-specific DNA binding
GO:0001135 IBAUniProttranscription factor activity, RNA polymerase II transcription factor recruiting
GO:0044212 IBAUniProttranscription regulatory region DNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IBAUniProtnucleus

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001005SANT/Myb domain
IPR017930Myb domain
IPR009057Homeobox domain-like

Mapman id Description
15.5.2.1.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)
No SignalP domains detected for this gene.