Gene: Potri.011G166100 (Populus trichocarpa)

Overview top

Gene Identifier
Potri.011G166100
Transcript Identifier
Potri.011G166100.1
Gene Type
Coding gene
Location
Chr11 : 18243111-18248210 : negative

Family

Gene family
HOM04M005851
(35 genes in 27 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Descriptions

Description
ubiquitin family protein; [ co-ortholog (1of3) of At3g13235, ]

Identifiers

Type Value
aliasPOPTR_0011s16890
aliasestExt_Genewise1_v1.C_1400125
idPotri.011G166100.v3.1
pacid37241667
tidPotri.011G166100.1.v3.1
tidPotri.011G166100.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006508 IEAInterProproteolysis
GO:0046686 IEAPLAZA Integrative Orthologyresponse to cadmium ionAT3G13235

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004190 IEAInterProaspartic-type endopeptidase activity
GO:0043130 IEAInterProubiquitin binding
GO:0005515 IEAInterProprotein binding
GO:0031593 IEAPLAZA Integrative Orthologypolyubiquitin bindingAT3G13235

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT3G13235
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT3G13235

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR019103Aspartic peptidase, DDI1-type
IPR021109Aspartic peptidase domain
IPR033322DNA damage-inducible protein 1
IPR000626Ubiquitin domain
IPR015940Ubiquitin-associated domain
IPR029071Ubiquitin-related domain
IPR009060UBA-like

Mapman id Description
19.2.4.4.2.Protein homeostasis.ubiquitin-proteasome system.ER-associated protein degradation (ERAD).delivery to proteasome.proteasome adaptor protein (DDI1)
No SignalP domains detected for this gene.