Gene: Potri.010G023800 (Populus trichocarpa)

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Gene Identifier
Potri.010G023800
Transcript Identifier
Potri.010G023800.1
Gene Type
Coding gene
Location
Chr10 : 3354341-3360788 : negative

Family

Gene family
HOM04M000392
(290 genes in 29 species)
specific family
Subfamily
ORTHO04M001263
(104 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
similar to cullin-like protein1. [ORG:Pisum sativum]; [ co-ortholog (2of4) of At1g59800, At1g02980, At4g02570, At1g59790, BAC10548, ]

Identifiers

Type Value
aliasestExt_Genewise1_v1.C_LG_X4345
aliasPOPTR_0010s02450
aliasPt-CUL1.3
idPotri.010G023800.v3.1
pacid37222202
tidPotri.010G023800.1.v3.1
tidPotri.010G023800.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006511 IEAInterProubiquitin-dependent protein catabolic process
GO:0010265 IEAPLAZA Integrative OrthologySCF complex assemblyAT4G02570
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT4G02570
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT4G02570
GO:0009867 IEAPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT4G02570
GO:0042752 IEAPLAZA Integrative Orthologyregulation of circadian rhythmAT4G02570
GO:0009753 IEAPLAZA Integrative Orthologyresponse to jasmonic acidAT4G02570
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT4G02570
GO:0010087 IEAPLAZA Integrative Orthologyphloem or xylem histogenesisAT4G02570

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0031625 IEAInterProubiquitin protein ligase binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT4G02570

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0031461 IEAInterProcullin-RING ubiquitin ligase complex
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT4G02570
GO:0005819 IEAPLAZA Integrative OrthologyspindleAT4G02570
GO:0005737 IEAPLAZA Integrative OrthologycytoplasmAT4G02570
GO:0000151 IEAPLAZA Integrative Orthologyubiquitin ligase complexAT4G02570
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT4G02570
GO:0000794 IEAPLAZA Integrative Orthologycondensed nuclear chromosomeAT4G02570
GO:0009524 IEAPLAZA Integrative OrthologyphragmoplastAT4G02570
GO:0009941 IEAPLAZA Integrative Orthologychloroplast envelopeAT1G02980

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011991Winged helix-turn-helix DNA-binding domain
IPR001373Cullin, N-terminal
IPR019559Cullin protein, neddylation domain
IPR016157Cullin, conserved site
IPR016158Cullin homology
IPR016159Cullin repeat-like-containing domain

Mapman id Description
19.2.2.8.1.2.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.scaffold component CUL1/CUL2
No SignalP domains detected for this gene.