Gene: Potri.005G093100 (Populus trichocarpa)

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Gene Identifier
Potri.005G093100
Transcript Identifier
Potri.005G093100.3
Gene Type
Coding gene
Location
Chr05 : 6963628-6968673 : negative

Family

Gene family
HOM04M002628
(62 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
similar to nucleolin; putative; [ ortholog of At1g48920,At3g18610,]

Identifiers

Type Value
aliasestExt_fgenesh4_pg.C_LG_V0327
aliasPOPTR_0005s09600
idPotri.005G093100.v3.1
pacid37263794
tidPotri.005G093100.3.v3.1
tidPotri.005G093100.3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010305 IEAPLAZA Integrative Orthologyleaf vascular tissue pattern formationAT1G48920
GO:0010588 IEAPLAZA Integrative Orthologycotyledon vascular tissue pattern formationAT1G48920
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT1G48920
GO:0000183 IEAPLAZA Integrative Orthologychromatin silencing at rDNAAT3G18610
GO:0048367 IEAPLAZA Integrative Orthologyshoot system developmentAT1G48920
GO:0048364 IEAPLAZA Integrative Orthologyroot developmentAT1G48920
GO:0000478 IEAPLAZA Integrative Orthologyendonucleolytic cleavage involved in rRNA processingAT1G48920
GO:0006364 IEAPLAZA Integrative OrthologyrRNA processingAT1G48920
GO:0042254 IEAPLAZA Integrative Orthologyribosome biogenesisAT1G48920
GO:0080057 IEAPLAZA Integrative Orthologysepal vascular tissue pattern formationAT1G48920
GO:0080056 IEAPLAZA Integrative Orthologypetal vascular tissue pattern formationAT1G48920

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0003729 IEAPLAZA Integrative OrthologymRNA bindingAT1G48920
GO:0031491 IEAPLAZA Integrative Orthologynucleosome bindingAT3G18610

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT1G48920
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G03480
GO:0005730 IEAPLAZA Integrative OrthologynucleolusAT1G48920

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR034350NUCL, RNA recognition motif 2
IPR034349NUCL, RNA recognition motif 1
IPR000504RNA recognition motif domain

Mapman id Description
17.1.1.1.1.Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.rRNA transcription.rDNA chromatin transcription factor (NCL)
No SignalP domains detected for this gene.