Gene: Potri.005G001600 (Populus trichocarpa)

Overview top

Gene Identifier
Potri.005G001600
Transcript Identifier
Potri.005G001600.1
Gene Type
Coding gene
Location
Chr05 : 95827-97379 : negative

Family

Gene family
HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
similar to myb family transcription factor (MYB4) (MYB86); similar to cDNA putative transcription factor (MYB86) mRNA; similar to partial cds GI:3941517; [ co-ortholog (1of2) of At1g57560, At5g26660, At1g09540, ]

Identifiers

Type Value
aliasPOPTR_0005s00340
aliasPt-MYB61.2
aliasMYB170
aliaseugene3.01310019
idPotri.005G001600.v3.1
pacid37265246
tidPotri.005G001600.1.v3.1
tidPotri.005G001600.1

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010089 IEAPLAZA Integrative Orthologyxylem developmentAT1G09540
GO:0010214 IEAPLAZA Integrative Orthologyseed coat developmentAT1G09540
GO:0010119 IEAPLAZA Integrative Orthologyregulation of stomatal movementAT1G09540
GO:0001944 IEAPLAZA Integrative Orthologyvasculature developmentAT1G09540
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT5G26660
GO:0009739 IEAPLAZA Integrative Orthologyresponse to gibberellinAT1G57560
GO:0048364 IEAPLAZA Integrative Orthologyroot developmentAT1G09540
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT1G09540
GO:0009751 IEAPLAZA Integrative Orthologyresponse to salicylic acidAT3G48920
GO:0006355 IEAPLAZA Integrative Orthologyregulation of transcription, DNA-templatedAT4G01680
GO:0009753 IEAPLAZA Integrative Orthologyresponse to jasmonic acidAT1G57560

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0003700 IEAPLAZA Integrative Orthologytranscription factor activity, sequence-specific DNA bindingAT1G09540
GO:0044212 IEAPLAZA Integrative Orthologytranscription regulatory region DNA bindingAT4G01680

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001005SANT/Myb domain
IPR017930Myb domain
IPR009057Homeobox domain-like

Mapman id Description
15.5.2.1.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)
No SignalP domains detected for this gene.