Gene: Potri.004G230500 (Populus trichocarpa)

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Gene Identifier
Potri.004G230500
Transcript Identifier
Potri.004G230500.1
Gene Type
Coding gene
Location
Chr04 : 23573140-23576333 : negative

Family

Gene family
HOM04M000365
(308 genes in 29 species)
specific family
Subfamily
ORTHO04M000348
(251 genes in 29 species)
specific family

Descriptions

Description
similar to probable zinc finger protein - alfalfa (fragment). [ORG:Medicago sativa]; [ co-ortholog (2of2) of At1g14510, T09646, At2g02470, ]

Identifiers

Type Value
aliasestExt_fgenesh4_pg.C_860100
aliasPOPTR_0606s00210
idPotri.004G230500.v3.1
pacid37230072
tidPotri.004G230500.1.v3.1
tidPotri.004G230500.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT5G20510
GO:0055065 IEAPLAZA Integrative Orthologymetal ion homeostasisAT2G02470
GO:0048767 IEAPLAZA Integrative Orthologyroot hair elongationAT2G02470
GO:0016036 IEAPLAZA Integrative Orthologycellular response to phosphate starvationAT2G02470
GO:0009414 IEAPLAZA Integrative Orthologyresponse to water deprivationAT5G20510

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0042393 IEAInterProhistone binding
GO:0003677 IEAPLAZA Integrative OrthologyDNA bindingAT5G20510
GO:0003714 IEAPLAZA Integrative Orthologytranscription corepressor activityAT5G20510
GO:0035064 IEAPLAZA Integrative Orthologymethylated histone bindingAT1G14510

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT1G14510
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT2G02470

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR021998Alfin
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR011011Zinc finger, FYVE/PHD-type

Mapman id Description
15.5.8.RNA biosynthesis.transcriptional regulation.transcription factor (Alfin)
No SignalP domains detected for this gene.