Gene: Potri.004G132900 (Populus trichocarpa)

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Gene Identifier
Potri.004G132900
Transcript Identifier
Potri.004G132900.1
Gene Type
Coding gene
Location
Chr04 : 15275227-15286516 : positive

Family

Gene family
HOM04M000392
(290 genes in 29 species)
specific family
Subfamily
ORTHO04M005522
(40 genes in 29 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
similar to hypothetical protein; [ co-ortholog (2of3) of At5g46210, At3g46910, At4g12100, ]

Identifiers

Type Value
aliasestExt_Genewise1_v1.C_LG_IV4485
aliasPOPTR_0004s14020
aliasPOPTR_0004s14010
aliasPOPTR_0004s14000
idPotri.004G132900.v3.1
pacid37230806
tidPotri.004G132900.1.v3.1
tidPotri.004G132900.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006511 IEAInterProubiquitin-dependent protein catabolic process
GO:0010100 IEAPLAZA Integrative Orthologynegative regulation of photomorphogenesisAT5G46210
GO:0048575 IEAPLAZA Integrative Orthologyshort-day photoperiodism, floweringAT5G46210
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT5G46210
GO:0048367 IEAPLAZA Integrative Orthologyshoot system developmentAT5G46210
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT5G46210
GO:0009755 IEAPLAZA Integrative Orthologyhormone-mediated signaling pathwayAT5G46210
GO:0048825 IEAPLAZA Integrative Orthologycotyledon developmentAT5G46210
GO:0010182 IEAPLAZA Integrative Orthologysugar mediated signaling pathwayAT5G46210
GO:0000209 IEAPLAZA Integrative Orthologyprotein polyubiquitinationAT5G46210
GO:0009640 IEAPLAZA Integrative OrthologyphotomorphogenesisAT5G46210
GO:0010154 IEAPLAZA Integrative Orthologyfruit developmentAT5G46210
GO:0006281 IEAPLAZA Integrative OrthologyDNA repairAT5G46210

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0031625 IEAInterProubiquitin protein ligase binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G46210

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0031461 IEAInterProcullin-RING ubiquitin ligase complex
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT5G46210
GO:0000151 IEAPLAZA Integrative Orthologyubiquitin ligase complexAT5G46210
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT5G46210
GO:0080008 IEAPLAZA Integrative OrthologyCul4-RING E3 ubiquitin ligase complexAT5G46210

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR011991Winged helix-turn-helix DNA-binding domain
IPR019559Cullin protein, neddylation domain
IPR001373Cullin, N-terminal
IPR016157Cullin, conserved site
IPR016158Cullin homology
IPR016159Cullin repeat-like-containing domain

Mapman id Description
19.2.2.8.3.1.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.scaffold component CUL4
26.1.1.3.1.External stimuli response.light.red/far red light.CUL4-DDB1 ubiquitination complex.scaffold component (CUL4)
No SignalP domains detected for this gene.