Gene: PH01000767G0370 (Phyllostachys edulis)

Overview top

Gene Identifier
PH01000767G0370
Transcript Identifier
PH01000767G0370.mRNA
Gene Type
Coding gene
Location
PH01000767 : 234433-238334 : positive

Family

Gene family
HOM04M000219
(435 genes in 27 species)
specific family
Subfamily
ORTHO04M009080
(27 genes in 22 species)
specific family

Descriptions

Description
ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed

Identifiers

Type Value
tidPH01000767G0370.mRNA

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006511 IEAInterProubiquitin-dependent protein catabolic process
GO:0010102 IEAPLAZA Tree-based Orthologylateral root morphogenesisAT4G33495
GO:0017004 IEAPLAZA Integrative Orthologycytochrome complex assemblyAT2G39120
GO:0030422 IEAPLAZA Tree-based Orthologyproduction of siRNA involved in RNA interferenceAT4G33495
GO:0031047 IEAPLAZA Tree-based Orthologygene silencing by RNAAT4G33495
GO:0000373 IEAPLAZA Integrative OrthologyGroup II intron splicingAT2G39120
GO:0006979 IEAPLAZA Tree-based Orthologyresponse to oxidative stressAT4G08940
GO:0008285 IEAPLAZA Tree-based Orthologynegative regulation of cell proliferationAT4G33495
GO:0010495 IEAPLAZA Tree-based Orthologylong-distance posttranscriptional gene silencingAT4G33495

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0031625 IEAInterProubiquitin protein ligase binding
GO:0003723 IEAPLAZA Integrative OrthologyRNA bindingAT2G39120

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT2G39120
GO:0005634 IEAPLAZA Tree-based OrthologynucleusAT4G33495
GO:0005654 IEAPLAZA Tree-based OrthologynucleoplasmAT4G33495
GO:0000418 IEAPLAZA Tree-based OrthologyDNA-directed RNA polymerase IV complexAT4G33495

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011991Winged helix-turn-helix DNA-binding domain
IPR021099Plant organelle RNA recognition domain
IPR001373Cullin, N-terminal
IPR016158Cullin homology

Mapman id Description
16.12.2.2.1.7.RNA processing.organelle machinery.pre-mRNA splicing.mitochondrial RNA splicing.group-II intron splicing.splicing factor (WTF9)
No SignalP domains detected for this gene.