Gene: PH01000008G1540 (Phyllostachys edulis)

Overview top

Gene Identifier
PH01000008G1540
Transcript Identifier
PH01000008G1540.mRNA
Gene Type
Coding gene
Location
PH01000008 : 995714-1000337 : negative

Family

Gene family
HOM04M001483
(100 genes in 27 species)
specific family
Subfamily
ORTHO04M002232
(75 genes in 27 species)
specific family

Descriptions

Description
polypyrimidine tract-binding protein, putative, expressed

Identifiers

Type Value
tidPH01000008G1540.mRNA

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009845 IEAPLAZA Tree-based Orthologyseed germinationAT5G53180
GO:0009846 IEAPLAZA Tree-based Orthologypollen germinationAT5G53180
GO:0043484 IEAPLAZA Tree-based Orthologyregulation of RNA splicingAT5G53180
GO:0000381 IEAPLAZA Tree-based Orthologyregulation of alternative mRNA splicing, via spliceosomeAT5G53180
GO:0006417 IEAPLAZA Tree-based Orthologyregulation of translationAT5G53180

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0003729 IEAPLAZA Tree-based OrthologymRNA bindingAT5G53180
GO:0003723 IEAPLAZA Tree-based OrthologyRNA bindingAT5G53180

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000932 IEAPLAZA Tree-based OrthologyP-bodyAT5G53180
GO:0005737 IEAPLAZA Tree-based OrthologycytoplasmAT5G53180
GO:0005634 IEAPLAZA Tree-based OrthologynucleusAT5G53180

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR034792PTBPH1/PTBPH2, RNA recognition motif 1
IPR034794PTBPH1/PTBPH2, RNA recognition motif 3
IPR000504RNA recognition motif domain

Mapman id Description
16.4.6.7.RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (PTB)
No SignalP domains detected for this gene.