Gene: PAB00000011 (Picea abies)

Overview top

Gene Identifier
PAB00000011
Transcript Identifier
PAB00000011.1
Gene Type
Coding gene
Location
MA_10002030 : 573-1928 : negative

Family

Gene family
HOM04M000150
(583 genes in 29 species)
specific family
Subfamily
ORTHO04M004125
(48 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
GeneNameMA_10002030g0010

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000184 IEAInterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0016246 IEAPLAZA Integrative OrthologyRNA interferenceAT5G47010
GO:0048571 IEAPLAZA Integrative Orthologylong-day photoperiodismAT5G47010
GO:0009744 IEAPLAZA Integrative Orthologyresponse to sucroseAT5G47010
GO:0009867 IEAPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT5G47010
GO:0042742 IEAPLAZA Integrative Orthologydefense response to bacteriumAT5G47010
GO:0009863 IEAPLAZA Integrative Orthologysalicylic acid mediated signaling pathwayAT5G47010
GO:0009611 IEAPLAZA Integrative Orthologyresponse to woundingAT5G47010
GO:0010182 IEAPLAZA Integrative Orthologysugar mediated signaling pathwayAT5G47010

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0004386 IEAInterProhelicase activity
GO:0005524 IEAInterProATP binding
GO:0008270 IEAInterProzinc ion binding
GO:0003729 IEAPLAZA Integrative OrthologymRNA bindingAT5G47010
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G47010

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737 IEAInterProcytoplasm
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT5G47010
GO:0009506 IEAPLAZA Integrative OrthologyplasmodesmaAT5G47010
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT5G47010
GO:0000932 IEAPLAZA Integrative OrthologyP-bodyAT5G47010

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR018999RNA helicase UPF1, UPF2-interacting domain

Mapman id Description
17.3.2.3.Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.effector protein (UPF1)
No SignalP domains detected for this gene.