Gene: Oropetium_20150105_25735 (Oropetium thomaeum)

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Gene Identifier
Oropetium_20150105_25735
Transcript Identifier
Oropetium_20150105_25735A
Gene Type
Coding gene
Location
Oropetium_genomic_20141112_125 : 191716-201100 : negative

Family

Gene family
HOM04M000566
(217 genes in 28 species)
specific family
Subfamily
ORTHO04M000578
(176 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
idOropetium_20150105_25735.v1.0
pacid36001111
tidOropetium_20150105_25735A.v1.0
tidOropetium_20150105_25735A

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0032776 IEAPLAZA Integrative OrthologyDNA methylation on cytosineAT3G07610
GO:0033169 IEAPLAZA Integrative Orthologyhistone H3-K9 demethylationAT3G07610
GO:0009555 IEAPLAZA Integrative Orthologypollen developmentAT3G07610
GO:0010468 IEAPLAZA Integrative Orthologyregulation of gene expressionAT3G07610
GO:0080188 IEAPLAZA Integrative OrthologyRNA-directed DNA methylationAT3G07610
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT3G07610
GO:0009908 IEAPLAZA Integrative Orthologyflower developmentAT3G07610
GO:0060969 IEAPLAZA Integrative Orthologynegative regulation of gene silencingAT3G07610
GO:0070919 IEAPLAZA Integrative Orthologyproduction of siRNA involved in chromatin silencing by small RNAAT3G07610

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IEAInterProDNA binding
GO:0032454 IEAPLAZA Integrative Orthologyhistone demethylase activity (H3-K9 specific)AT3G07610
GO:0031490 IEAPLAZA Integrative Orthologychromatin DNA bindingAT3G07610

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003347JmjC domain
IPR001841Zinc finger, RING-type
IPR017956AT hook, DNA-binding motif

Mapman id Description
12.3.3.9.1.Chromatin organisation.histone modifications.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM3)
15.5.29.RNA biosynthesis.transcriptional regulation.transcription factor (JUMONJI)
No SignalP domains detected for this gene.