Gene: Oropetium_20150105_23616 (Oropetium thomaeum)

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Gene Identifier
Oropetium_20150105_23616
Transcript Identifier
Oropetium_20150105_23616A
Gene Type
Coding gene
Location
Oropetium_genomic_20141112_103 : 394479-405283 : negative

Family

Gene family
HOM04M000352
(316 genes in 29 species)
specific family
Subfamily
ORTHO04M001636
(90 genes in 29 species)
specific family

Descriptions

Description
Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Pisum sativum)

Identifiers

Type Value
idOropetium_20150105_23616.v1.0
pacid36007619
tidOropetium_20150105_23616A.v1.0
tidOropetium_20150105_23616A

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006352 IEAInterProDNA-templated transcription, initiation
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0042026 IEAInterProprotein refolding
GO:0006457 IEAInterProprotein folding
GO:0009658 IEAPLAZA Integrative Orthologychloroplast organizationAT2G28000
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT2G28000

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005524 IEAInterProATP binding
GO:0003677 IEAInterProDNA binding
GO:0003700 IEAInterProtranscription factor activity, sequence-specific DNA binding
GO:0016987 IEAInterProsigma factor activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737 IEAInterProcytoplasm
GO:0009579 IEAPLAZA Integrative OrthologythylakoidAT2G28000
GO:0009941 IEAPLAZA Integrative Orthologychloroplast envelopeAT2G28000
GO:0048046 IEAPLAZA Integrative OrthologyapoplastAT2G28000
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT2G28000
GO:0005739 IEAPLAZA Integrative OrthologymitochondrionAT2G28000
GO:0022626 IEAPLAZA Integrative Orthologycytosolic ribosomeAT2G28000
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT2G28000
GO:0009570 IEAPLAZA Integrative Orthologychloroplast stromaAT2G28000

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR027413GroEL-like equatorial domain
IPR011991Winged helix-turn-helix DNA-binding domain
IPR027409GroEL-like apical domain
IPR002423Chaperonin Cpn60/TCP-1 family
IPR007630RNA polymerase sigma-70 region 4
IPR007627RNA polymerase sigma-70 region 2
IPR007624RNA polymerase sigma-70 region 3
IPR003323OTU domain
IPR001844Chaperonin Cpn60
IPR018370Chaperonin Cpn60, conserved site
IPR013324RNA polymerase sigma factor, region 3/4
IPR013325RNA polymerase sigma factor, region 2
IPR014284RNA polymerase sigma-70 like domain

Mapman id Description
1.1.8.1.6.2.1Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.Cpn60 chaperonin heterodimer.subunit alpha
1.2.1.2.1.1Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.CPN60 assembly chaperone complex.component CPN60a
15.6.2.1.RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma)
19.1.7.1.Protein homeostasis.protein quality control.Hsp60 chaperone system.chaperone (Hsp60)
19.2.3.1.2.7.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein deconjugation.ubiquitin deconjugation.OTU deubiquitinase activities.deubiquitinase (OTU6-12)
No SignalP domains detected for this gene.