PLAZA 4.0 Monocots gene overview : Oropetium_20150105_16900

Gene: Oropetium_20150105_16900 (Oropetium thomaeum)

Overview

Gene Identifier: Oropetium_20150105_16900
Transcript Identifier: Oropetium_20150105_16900A
Gene Type: Coding gene
Location: Oropetium_genomic_20141112_061 : 390373-391804 : negative

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
id	Oropetium_20150105_16900.v1.0
pacid	35993913
tid	Oropetium_20150105_16900A.v1.0
tid	Oropetium_20150105_16900A

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.