Gene: Oropetium_20150105_12878 (Oropetium thomaeum)

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Gene Identifier
Oropetium_20150105_12878
Transcript Identifier
Oropetium_20150105_12878A
Gene Type
Coding gene
Location
Oropetium_genomic_20141112_033 : 692325-696057 : negative

Family

Gene family
HOM04M004860
(39 genes in 28 species)
specific family

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type Value
idOropetium_20150105_12878.v1.0
pacid35999794
tidOropetium_20150105_12878A.v1.0
tidOropetium_20150105_12878A

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007034 IEAInterProvacuolar transport
GO:0010252 IEAInterProauxin homeostasis
GO:0048364 IEAInterProroot development
GO:0006896 IEAPLAZA Integrative OrthologyGolgi to vacuole transportAT5G06140
GO:0006623 IEAPLAZA Integrative Orthologyprotein targeting to vacuoleAT5G06140
GO:0008333 IEAPLAZA Integrative Orthologyendosome to lysosome transportAT5G06140
GO:0009958 IEAPLAZA Integrative Orthologypositive gravitropismAT5G06140

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0035091 IEAInterProphosphatidylinositol binding
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT5G06140

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0030904 IEAInterProretromer complex
GO:0005771 IEAPLAZA Integrative Orthologymultivesicular bodyAT5G06140
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT5G06140
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT5G06140
GO:0043231 IEAPLAZA Integrative Orthologyintracellular membrane-bounded organelleAT5G06140
GO:0005768 IEAPLAZA Integrative OrthologyendosomeAT5G06140

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001683Phox homologous domain
IPR033241Sorting nexin 1, plant
IPR015404Sorting nexin Vps5-like, C-terminal
IPR027267Arfaptin homology (AH) domain/BAR domain

Mapman id Description
22.5.5.3.5.Vesicle trafficking.endomembrane trafficking.protein recycling.Retromer protein recycling complex.component SNX1
No SignalP domains detected for this gene.