PLAZA 4.0 Monocots gene overview : OB04G28080

Gene: OB04G28080 (Oryza brachyantha)

Overview

Gene Identifier: OB04G28080
Transcript Identifier: OB04G28080.1
Gene Type: Coding gene
Location: 4 : 15216311-15217051 : negative

Family

Gene family: HOM04M000051
(1378 genes in 27 species)
specific family
Subfamily: ORTHO04M000043
(822 genes in 27 species)
specific family

Descriptions

Description: Pectinesterase

Identifiers

Type	Value
logic_name	genemodel_v1.4_oge
tid	OB04G28080.1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0042545	IEA	InterPro	cell wall modification

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0030599	IEA	InterPro	pectinesterase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005618	IEA	InterPro	cell wall

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR012334	Pectin lyase fold
IPR000070	Pectinesterase, catalytic
IPR033131	Pectinesterase, Asp active site
IPR011050	Pectin lyase fold/virulence factor

Mapman id	Description
21.3.1.2.1	.Cell wall organisation.pectin.homogalacturonan.modification and degradation.pectin methylesterase

No SignalP domains detected for this gene.