Gene: OB03G24740 (Oryza brachyantha)

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Gene Identifier
OB03G24740
Transcript Identifier
OB03G24740.1
Gene Type
Coding gene
Location
3 : 9787772-9794031 : positive

Family

Gene family
HOM04M001168
(122 genes in 27 species)
specific family
Subfamily
ORTHO04M001284
(103 genes in 27 species)
specific family

Descriptions

Description
Uncharacterized protein

Identifiers

Type Value
logic_namegenemodel_v1.4_oge
tidOB03G24740.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355 IEAInterProregulation of transcription, DNA-templated
GO:0009584 IEAInterProdetection of visible light
GO:0018298 IEAInterProprotein-chromophore linkage
GO:0007165 IEAInterProsignal transduction
GO:0010201 IEAPLAZA Tree-based Orthologyresponse to continuous far red light stimulus by the high-irradiance response systemAT1G09570
GO:0010202 IEAPLAZA Integrative Orthologyresponse to low fluence red light stimulusAT2G18790
GO:2000028 IEAPLAZA Integrative Orthologyregulation of photoperiodism, floweringAT2G18790
GO:0010244 IEAPLAZA Integrative Orthologyresponse to low fluence blue light stimulus by blue low-fluence systemAT2G18790
GO:0031347 IEAPLAZA Integrative Orthologyregulation of defense responseAT2G18790
GO:0010029 IEAPLAZA Integrative Orthologyregulation of seed germinationAT2G18790
GO:0015979 IEAPLAZA Integrative OrthologyphotosynthesisAT2G18790
GO:0010203 IEAPLAZA Tree-based Orthologyresponse to very low fluence red light stimulusAT1G09570
GO:0017012 IEAPLAZA Integrative Orthologyprotein-phytochromobilin linkageAT2G18790
GO:0010148 IEAPLAZA Integrative OrthologytranspirationAT2G18790
GO:0009638 IEAPLAZA Integrative OrthologyphototropismAT2G18790
GO:0009867 IEAPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0009687 IEAPLAZA Integrative Orthologyabscisic acid metabolic processAT2G18790
GO:0000724 IEAPLAZA Tree-based Orthologydouble-strand break repair via homologous recombinationLOC_Os03g54084
GO:0009585 IEAPLAZA Homology (enrichment)red, far-red light phototransduction
GO:0009266 IEAPLAZA Integrative Orthologyresponse to temperature stimulusAT2G18790
GO:0009640 IEAPLAZA Integrative OrthologyphotomorphogenesisAT2G18790
GO:0010374 IEAPLAZA Integrative Orthologystomatal complex developmentAT2G18790
GO:0017006 IEAPLAZA Homology (enrichment)protein-tetrapyrrole linkage
GO:0017148 IEAPLAZA Tree-based Orthologynegative regulation of translationAT1G09570
GO:0010017 IEAPLAZA Integrative Orthologyred or far-red light signaling pathwayAT4G16250
GO:0010617 IEAPLAZA Integrative Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0046685 IEAPLAZA Tree-based Orthologyresponse to arsenic-containing substanceAT1G09570
GO:0010218 IEAPLAZA Integrative Orthologyresponse to far red lightAT2G18790
GO:0045892 IEAPLAZA Integrative Orthologynegative regulation of transcription, DNA-templatedAT2G18790
GO:0009649 IEAPLAZA Integrative Orthologyentrainment of circadian clockAT2G18790
GO:0009409 IEAPLAZA Integrative Orthologyresponse to coldAT2G18790
GO:0006325 IEAPLAZA Integrative Orthologychromatin organizationAT2G18790
GO:0009630 IEAPLAZA Integrative OrthologygravitropismAT2G18790
GO:0010161 IEAPLAZA Integrative Orthologyred light signaling pathwayAT2G18790
GO:0007131 IEAPLAZA Tree-based Orthologyreciprocal meiotic recombinationLOC_Os03g54084

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000155 IEAInterProphosphorelay sensor kinase activity
GO:0005515 IEAInterProprotein binding
GO:0009883 IEAPLAZA Integrative Orthologyred or far-red light photoreceptor activityAT4G16250
GO:0004672 IEAPLAZA Tree-based Orthologyprotein kinase activityAT1G09570
GO:0009881 IEAPLAZA Homology (enrichment)photoreceptor activity
GO:0042803 IEAPLAZA Integrative Orthologyprotein homodimerization activityAT2G18790
GO:0042802 IEAPLAZA Integrative Orthologyidentical protein bindingAT4G16250
GO:0003729 IEAPLAZA Tree-based OrthologymRNA bindingAT1G09570
GO:1990841 IEAPLAZA Integrative Orthologypromoter-specific chromatin bindingAT2G18790
GO:0031517 IEAPLAZA Integrative Orthologyred light photoreceptor activityAT2G18790
GO:0031516 IEAPLAZA Integrative Orthologyfar-red light photoreceptor activityAT2G18790
GO:0043565 IEAPLAZA Integrative Orthologysequence-specific DNA bindingAT2G18790

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737 IEAPLAZA Tree-based OrthologycytoplasmAT1G09570
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT4G16250
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT2G18790
GO:0016604 IEAPLAZA Integrative Orthologynuclear bodyAT2G18790

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR003594Histidine kinase-like ATPase, C-terminal domain
IPR029016GAF domain-like
IPR013515Phytochrome, central region
IPR003661Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
IPR003018GAF domain
IPR013767PAS fold
IPR001294Phytochrome
IPR013516Phytochrome chromophore binding site
IPR016132Phytochrome chromophore attachment domain
IPR005467Histidine kinase domain

Mapman id Description
26.1.1.1.External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY)
26.4.1.2.External stimuli response.temperature.sensing and signalling.temperature sensor protein (PHY-B)
No SignalP domains detected for this gene.