Gene: OB03G24100 (Oryza brachyantha)

Overview top

Gene Identifier
OB03G24100
Transcript Identifier
OB03G24100.1
Gene Type
Coding gene
Location
3 : 9303640-9306346 : negative

Family

Gene family
HOM04M000051
(1378 genes in 27 species)
specific family
Subfamily
ORTHO04M000043
(822 genes in 27 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
Pectinesterase

Identifiers

Type Value
logic_namegenemodel_v1.4_oge
tidOB03G24100.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0042545 IEAInterProcell wall modification
GO:0048358 IEAPLAZA Integrative Orthologymucilage pectin biosynthetic processAT5G49180
GO:0048359 IEAPLAZA Integrative Orthologymucilage metabolic process involved in seed coat developmentAT5G49180

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0030599 IEAInterPropectinesterase activity
GO:0004857 IEAInterProenzyme inhibitor activity
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT1G53840

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005618 IEAInterProcell wall
GO:0090406 IEAPLAZA Integrative Orthologypollen tubeAT3G06830
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT1G53840
GO:0005774 IEAPLAZA Integrative Orthologyvacuolar membraneAT1G53840
GO:0005794 IEAPLAZA Integrative OrthologyGolgi apparatusAT1G53840
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT1G53840
GO:0048046 IEAPLAZA Integrative OrthologyapoplastAT4G15980
GO:0005768 IEAPLAZA Integrative OrthologyendosomeAT1G53840
GO:0009506 IEAPLAZA Integrative OrthologyplasmodesmaAT1G53840
GO:0005802 IEAPLAZA Integrative Orthologytrans-Golgi networkAT1G53840

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012334Pectin lyase fold
IPR000070Pectinesterase, catalytic
IPR006501Pectinesterase inhibitor domain
IPR033131Pectinesterase, Asp active site
IPR011050Pectin lyase fold/virulence factor

Mapman id Description
21.3.1.2.1.Cell wall organisation.pectin.homogalacturonan.modification and degradation.pectin methylesterase
No SignalP domains detected for this gene.