Gene: OB02G40960 (Oryza brachyantha)

Overview top

Gene Identifier
OB02G40960
Transcript Identifier
OB02G40960.1
Gene Type
Coding gene
Location
2 : 24288968-24294320 : negative

Family

Gene family
HOM04M000692
(187 genes in 29 species)
specific family
Subfamily
ORTHO04M000791
(143 genes in 29 species)
specific family

Descriptions

Description
Transducin/WD40 repeat-like superfamily protein

Identifiers

Type Value
logic_namegenemodel_v1.4_oge
tidOB02G40960.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010119 IEAPLAZA Integrative Orthologyregulation of stomatal movementAT2G32950
GO:0009649 IEAPLAZA Integrative Orthologyentrainment of circadian clockAT2G32950
GO:0046283 IEAPLAZA Integrative Orthologyanthocyanin-containing compound metabolic processAT2G32950
GO:0048573 IEAPLAZA Integrative Orthologyphotoperiodism, floweringAT2G32950
GO:0009647 IEAPLAZA Integrative OrthologyskotomorphogenesisAT2G32950
GO:0009641 IEAPLAZA Integrative Orthologyshade avoidanceAT2G32950
GO:0009640 IEAPLAZA Integrative OrthologyphotomorphogenesisAT2G32950
GO:0006281 IEAPLAZA Integrative OrthologyDNA repairAT2G32950

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515 IEAInterProprotein binding
GO:0004842 IEAPLAZA Integrative Orthologyubiquitin-protein transferase activityAT2G32950
GO:0042802 IEAPLAZA Integrative Orthologyidentical protein bindingAT2G32950

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000152 IEAPLAZA Integrative Orthologynuclear ubiquitin ligase complexAT2G32950
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT2G32950
GO:0016604 IEAPLAZA Integrative Orthologynuclear bodyAT2G32950

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001841Zinc finger, RING-type
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR015943WD40/YVTN repeat-like-containing domain
IPR001680WD40 repeat
IPR019775WD40 repeat, conserved site
IPR017907Zinc finger, RING-type, conserved site
IPR017986WD40-repeat-containing domain

Mapman id Description
18.4.16.Protein modification.phosphorylation.protein kinase (PEK)
19.2.2.8.3.4.1.Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP1-SPA substrate adaptor subcomplex.component COP1
26.1.1.3.3.1.External stimuli response.light.red/far red light.CUL4-DDB1 ubiquitination complex.COP1-SPA substrate adaptor subcomplex.component COP1
No SignalP domains detected for this gene.