PLAZA 4.0 Monocots gene overview : MAC02G2218

Gene: MAC02G2218 (Musa acuminata)

Overview

Gene Identifier: MAC02G2218
Transcript Identifier: MAC02G2218.1
Gene Type: Coding gene
Location: chr9 : 27310060-27312692 : negative

Family

Gene family: HOM04M000110
(770 genes in 26 species)
specific family
Subfamily: ORTHO04M000057
(706 genes in 26 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Type	Value
name	GSMUA_Achr9G22180_001
tid	GSMUA_Achr9T22180_001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR032675	Leucine-rich repeat domain, L domain-like
IPR025875	Leucine rich repeat 4
IPR001611	Leucine-rich repeat
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type

Mapman id	Description
35.1	not assigned.annotated

No SignalP domains detected for this gene.