Gene: LOC_Os12g42980 (Oryza sativa ssp. japonica)

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Gene Identifier
LOC_Os12g42980
Transcript Identifier
LOC_Os12g42980.1
Gene Type
Coding gene
Location
Chr12 : 26698886-26703270 : negative

Family

Gene family
HOM04M000369
(308 genes in 29 species)
specific family
Subfamily
ORTHO04M000661
(162 genes in 29 species)
specific family

Descriptions

Description
cysteine synthase, putative, expressed

Identifiers

Type Value
idLOC_Os12g42980.MSUv7.0
pacid33154167
tidLOC_Os12g42980.1.MSUv7.0
tidLOC_Os12g42980.1
RAPOs12g0625000

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006535 IBA, IEA, UniProtcysteine biosynthetic process from serine
GO:0019344 IEAPLAZA Integrative Orthologycysteine biosynthetic processAT5G28020
GO:0007568 IEAPLAZA Integrative OrthologyagingAT4G14880
GO:0046686 IEAPLAZA Integrative Orthologyresponse to cadmium ionAT4G14880
GO:0080145 IEAPLAZA Integrative Orthologycysteine homeostasisAT5G28030
GO:0009567 IEAPLAZA Integrative Orthologydouble fertilization forming a zygote and endospermAT4G14880
GO:0009860 IEAPLAZA Integrative Orthologypollen tube growthAT4G14880
GO:0010043 IEAPLAZA Integrative Orthologyresponse to zinc ionAT3G22460

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004124 IBA, IEA, UniProtcysteine synthase activity
GO:0030170 IBAUniProtpyridoxal phosphate binding
GO:0016740 IEAUniProttransferase activity
GO:0005515 IEAPLAZA Integrative Orthologyprotein bindingAT4G14880
GO:0080146 IEAPLAZA Integrative OrthologyL-cysteine desulfhydrase activityAT5G28030

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739 RCAGene OntologymitochondrionGR_REF:7047
GO:0005737 IBAUniProtcytoplasm
GO:0005829 IEAPLAZA Integrative OrthologycytosolAT4G14880
GO:0048046 IEAPLAZA Integrative OrthologyapoplastAT4G14880
GO:0016020 IEAPLAZA Integrative OrthologymembraneAT4G14880
GO:0005777 IEAPLAZA Integrative OrthologyperoxisomeAT4G14880
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT4G14880
GO:0005634 IEAPLAZA Integrative OrthologynucleusAT4G14880
GO:0005886 IEAPLAZA Integrative Orthologyplasma membraneAT4G14880
GO:0005774 IEAPLAZA Integrative Orthologyvacuolar membraneAT4G14880
GO:0009570 IEAPLAZA Integrative Orthologychloroplast stromaAT4G14880

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzyme
IPR001216Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site
IPR005859Cysteine synthase CysK
IPR005856Cysteine synthase

Mapman id Description
4.1.4.2.2.Amino acid metabolism.biosynthesis.serine family.cysteine.O-acetylserine sulfydrylase
No SignalP domains detected for this gene.