Gene: LOC_Os12g34874 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
LOC_Os12g34874
Transcript Identifier
LOC_Os12g34874.1
Gene Type
Coding gene
Location
Chr12 : 21230903-21235073 : negative

Family

Gene family
HOM04M001860
(82 genes in 29 species)
specific family
Subfamily
ORTHO04M003024
(60 genes in 29 species)
specific family

Descriptions

Description
bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed

Identifiers

Type Value
idLOC_Os12g34874.MSUv7.0
pacid33150843
tidLOC_Os12g34874.1.MSUv7.0
tidLOC_Os12g34874.1
RAPOs12g0534000

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0055114 IEAInterProoxidation-reduction process
GO:0019632 IEAInterProshikimate metabolic process
GO:0009793 IEAPLAZA Integrative Orthologyembryo development ending in seed dormancyAT3G06350

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003855 IEAInterPro3-dehydroquinate dehydratase activity
GO:0003824 IEAInterProcatalytic activity
GO:0004764 IEAInterProshikimate 3-dehydrogenase (NADP+) activity
GO:0050661 IEAInterProNADP binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507 IEAPLAZA Integrative OrthologychloroplastAT3G06350
GO:0009570 IEAPLAZA Integrative Orthologychloroplast stromaAT3G06350

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR0013813-dehydroquinate dehydratase type I
IPR013785Aldolase-type TIM barrel
IPR022893Shikimate dehydrogenase family
IPR006151Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase
IPR013708Shikimate dehydrogenase substrate binding, N-terminal
IPR016040NAD(P)-binding domain
IPR011342Shikimate dehydrogenase

Mapman id Description
4.1.5.1.3.Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-dehydroquinate dehydratase and shikimate dehydrogenase
No SignalP domains detected for this gene.