Gene: LOC_Os12g21500 (Oryza sativa ssp. japonica)

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Gene Identifier
LOC_Os12g21500
Transcript Identifier
LOC_Os12g21500.1
Gene Type
Coding gene
Location
Chr12 : 12075512-12087420 : positive

Family

Gene family
HOM04M004898
(39 genes in 29 species)
specific family

Descriptions

Description
exosome complex exonuclease, putative, expressed

Identifiers

Type Value
idLOC_Os12g21500.MSUv7.0
pacid33150039
tidLOC_Os12g21500.1.MSUv7.0
tidLOC_Os12g21500.1
RAPOs12g0403800

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0043928 IBAUniProtexonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0000467 IBAUniProtexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0071028 IBAUniProtnuclear mRNA surveillance
GO:0071042 IBAUniProtnuclear polyadenylation-dependent mRNA catabolic process
GO:0071035 IBAUniProtnuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 IBAUniProtnuclear polyadenylation-dependent tRNA catabolic process
GO:0034427 IBAUniProtnuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 IBAUniProtU1 snRNA 3'-end processing
GO:0034475 IBAUniProtU4 snRNA 3'-end processing
GO:0034476 IBAUniProtU5 snRNA 3'-end processing

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0017091 IBAUniProtAU-rich element binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000177 IBAUniProtcytoplasmic exosome (RNase complex)
GO:0000176 IBAUniProtnuclear exosome (RNase complex)

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR027408PNPase/RNase PH domain
IPR015847Exoribonuclease, phosphorolytic domain 2
IPR001247Exoribonuclease, phosphorolytic domain 1
IPR020568Ribosomal protein S5 domain 2-type fold

Mapman id Description
16.8.1.1.3.RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP42
No SignalP domains detected for this gene.