Gene: LOC_Os11g34270 (Oryza sativa ssp. japonica)

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Gene Identifier
LOC_Os11g34270
Transcript Identifier
LOC_Os11g34270.1
Gene Type
Coding gene
Location
Chr11 : 20071528-20073768 : positive

Family

Gene family
HOM04M001378
(107 genes in 29 species)
specific family
Subfamily
ORTHO04M017157
(3 genes in 3 species)
specific family

Descriptions

Description
ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed

Identifiers

Type Value
idLOC_Os11g34270.MSUv7.0
pacid33161155
tidLOC_Os11g34270.1.MSUv7.0
tidLOC_Os11g34270.1
RAPOs11g0545300

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000737 IEAUniProtDNA catabolic process, endonucleolytic
GO:0016579 IEAUniProtprotein deubiquitination
GO:0006511 IEAUniProtubiquitin-dependent protein catabolic process
GO:0042138 IBAUniProtmeiotic DNA double-strand break formation
GO:0000706 IBAUniProtmeiotic DNA double-strand break processing
GO:0007131 IBAUniProtreciprocal meiotic recombination
GO:0006259 IEAPLAZA Homology (enrichment)DNA metabolic process

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IBA, IEAUniProtDNA binding
GO:0036459 IEAUniProtthiol-dependent ubiquitinyl hydrolase activity
GO:0003918 IBAUniProtDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0016889 IBAUniProtendodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0003824 IEAPLAZA Homology (enrichment)catalytic activity
GO:0005524 IEAPLAZA Homology (enrichment)ATP binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005694 IEAInterProchromosome
GO:0000228 IBAUniProtnuclear chromosome

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002815Spo11/DNA topoisomerase VI subunit A
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR018200Ubiquitin specific protease, conserved site
IPR028889Ubiquitin specific protease domain

Mapman id Description
35.1not assigned.annotated
No SignalP domains detected for this gene.