Gene: LOC_Os10g41200 (Oryza sativa ssp. japonica)

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Gene Identifier
LOC_Os10g41200
Transcript Identifier
LOC_Os10g41200.1
Gene Type
Coding gene
Location
Chr10 : 22128727-22131493 : negative

Family

Gene family
HOM04M000097
(875 genes in 29 species)
specific family
Subfamily
ORTHO04M000632
(167 genes in 28 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
MYB family transcription factor, putative, expressed

Identifiers

Type Value
idLOC_Os10g41200.MSUv7.0
pacid33101240
tidLOC_Os10g41200.1.MSUv7.0
tidLOC_Os10g41200.1
RAPOs10g0561400

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0045892 IDAUniProtnegative regulation of transcription, DNA-templated
GO:0009723 IBAUniProtresponse to ethylene
GO:0009739 IEPUniProtresponse to gibberellin
GO:0009744 IEPUniProtresponse to sucrose
GO:0006351 IEAUniProttranscription, DNA-templated
GO:2000469 IEAPLAZA Integrative Orthologynegative regulation of peroxidase activityAT5G47390
GO:0048366 IEAPLAZA Integrative Orthologyleaf developmentAT5G47390
GO:0031540 IEAPLAZA Integrative Orthologyregulation of anthocyanin biosynthetic processAT1G70000
GO:0009737 IEAPLAZA Integrative Orthologyresponse to abscisic acidAT1G74840
GO:0030307 IEAPLAZA Integrative Orthologypositive regulation of cell growthAT5G47390
GO:0000122 IEAPLAZA Integrative Orthologynegative regulation of transcription from RNA polymerase II promoterAT5G47390
GO:0048527 IEAPLAZA Integrative Orthologylateral root developmentAT5G47390
GO:0009646 IEAPLAZA Integrative Orthologyresponse to absence of lightAT5G47390
GO:0009733 IEAPLAZA Integrative Orthologyresponse to auxinAT1G74840
GO:0009751 IEAPLAZA Integrative Orthologyresponse to salicylic acidAT1G74840
GO:0046686 IEAPLAZA Integrative Orthologyresponse to cadmium ionAT1G74840
GO:0006355 IEAPLAZA Integrative Orthologyregulation of transcription, DNA-templatedAT1G70000
GO:0080167 IEAPLAZA Integrative Orthologyresponse to karrikinAT1G70000
GO:0009753 IEAPLAZA Integrative Orthologyresponse to jasmonic acidAT1G74840
GO:0010150 IEAPLAZA Integrative Orthologyleaf senescenceAT5G47390
GO:0090697 IEAPLAZA Integrative Orthologypost-embryonic plant organ morphogenesisAT5G47390
GO:0010252 IEAPLAZA Integrative Orthologyauxin homeostasisAT5G47390
GO:0009651 IEAPLAZA Integrative Orthologyresponse to salt stressAT1G74840

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003676 IEAInterPronucleic acid binding
GO:0008270 IEAInterProzinc ion binding
GO:0003677 IEAUniProtDNA binding
GO:0046872 IEAUniProtmetal ion binding
GO:0003700 IDAUniProttranscription factor activity, sequence-specific DNA binding
GO:0003682 IEAPLAZA Integrative Orthologychromatin bindingAT1G70000
GO:0043565 IEAPLAZA Integrative Orthologysequence-specific DNA bindingAT1G74840
GO:0000976 IEAPLAZA Integrative Orthologytranscription regulatory region sequence-specific DNA bindingAT5G47390

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009536 RCAGene OntologyplastidGR_REF:7047
GO:0005634 IEAUniProtnucleus

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001005SANT/Myb domain
IPR017930Myb domain
IPR001878Zinc finger, CCHC-type
IPR009057Homeobox domain-like
IPR006447Myb domain, plants

Mapman id Description
15.5.2.2.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related)
No SignalP domains detected for this gene.