PLAZA 4.0 Monocots gene overview : LOC_Os08g33150

Gene: LOC_Os08g33150 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: LOC_Os08g33150
Transcript Identifier: LOC_Os08g33150.1
Gene Type: Coding gene
Location: Chr8 : 20600630-20601795 : positive

Family

Gene family: HOM04M000010
(3187 genes in 28 species)
specific family
Duplication type: Block duplicate

Descriptions

Description: MYB family transcription factor, putative, expressed

Identifiers

Type	Value
id	LOC_Os08g33150.MSUv7.0
pacid	33106767
tid	LOC_Os08g33150.1.MSUv7.0
tid	LOC_Os08g33150.1
RAP	Os08g0428200

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:2000652	IEA	PLAZA Integrative Orthology	regulation of secondary cell wall biogenesis	AT1G66230

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	InterPro	DNA binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA	PLAZA Integrative Orthology	nucleus	AT1G66230

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox domain-like

Mapman id	Description
15.5.2.1	.RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)

No SignalP domains detected for this gene.