Gene: LOC_Os08g06050 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
LOC_Os08g06050
Transcript Identifier
LOC_Os08g06050.1
Gene Type
Coding gene
Location
Chr8 : 3301474-3304183 : negative

Family

Gene family
HOM04M001378
(107 genes in 29 species)
specific family
Subfamily
ORTHO04M007697
(33 genes in 28 species)
specific family

Descriptions

Description
OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed

Identifiers

Type Value
idLOC_Os08g06050.MSUv7.0
pacid33102725
tidLOC_Os08g06050.1.MSUv7.0
tidLOC_Os08g06050.1
RAPOs08g0156900

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000737 IEAUniProtDNA catabolic process, endonucleolytic
GO:0006259 IEAInterProDNA metabolic process
GO:0051026 IEAUniProtchiasma assembly
GO:0009553 IEAUniProtembryo sac development
GO:0042138 IBAUniProtmeiotic DNA double-strand break formation
GO:0000706 IBAUniProtmeiotic DNA double-strand break processing
GO:0009555 IEAUniProtpollen development
GO:0007131 IBAUniProtreciprocal meiotic recombination
GO:0048316 IEAUniProtseed development
GO:0048437 IEAPLAZA Integrative Orthologyfloral organ developmentAT1G63990

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677 IBA, IEA, UniProtDNA binding
GO:0003824 IEAInterProcatalytic activity
GO:0005524 IEAUniProtATP binding
GO:0003918 IBAUniProtDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0016889 IBAUniProtendodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0046872 IEAUniProtmetal ion binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005694 IEAInterProchromosome
GO:0000228 IBAUniProtnuclear chromosome

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR034136Topoisomerase 6 subunit A/Spo11, TOPRIM domain
IPR011991Winged helix-turn-helix DNA-binding domain
IPR002815Spo11/DNA topoisomerase VI subunit A
IPR013049Spo11/DNA topoisomerase VI, subunit A, N-terminal

Mapman id Description
13.3.6.2.1.1.Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.component a/SPO11
No SignalP domains detected for this gene.