Gene: LOC_Os06g39700 (Oryza sativa ssp. japonica)

Overview top

Gene Identifier
LOC_Os06g39700
Transcript Identifier
LOC_Os06g39700.1
Gene Type
Coding gene
Location
Chr6 : 23566354-23568406 : positive

Family

Gene family
HOM04M002058
(77 genes in 22 species)
specific family
Subfamily
ORTHO04M005088
(42 genes in 18 species)
specific family
Duplication type
Block duplicate

Descriptions

Description
DNA-directed RNA polymerase subunit alpha, putative, expressed

Identifiers

Type Value
idLOC_Os06g39700.MSUv7.0
pacid33147524
tidLOC_Os06g39700.1.MSUv7.0
tidLOC_Os06g39700.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006412 IEAInterProtranslation
GO:0006351 IEAInterProtranscription, DNA-templated
GO:0006354 IEAPLAZA Integrative OrthologyDNA-templated transcription, elongationATCG00740

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003735 IEAInterProstructural constituent of ribosome
GO:0003677 IEAInterProDNA binding
GO:0003899 IEAInterProDNA-directed 5'-3' RNA polymerase activity
GO:0046983 IEAInterProprotein dimerization activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005840 IEAInterProribosome
GO:0009534 IEAPLAZA Integrative Orthologychloroplast thylakoidATCG00740
GO:0009507 IEAPLAZA Integrative OrthologychloroplastATCG00740
GO:0009570 IEAPLAZA Integrative Orthologychloroplast stromaATCG00740
GO:0009295 IEAPLAZA Integrative OrthologynucleoidATCG00740

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001971Ribosomal protein S11
IPR011773DNA-directed RNA polymerase, alpha subunit
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-type
IPR011260RNA polymerase, alpha subunit, C-terminal
IPR011262DNA-directed RNA polymerase, insert domain
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domain

Mapman id Description
15.6.1.2.1.1.RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoA
No SignalP domains detected for this gene.