PLAZA 4.0 Monocots gene overview : LOC_Os06g11140

Gene: LOC_Os06g11140 (Oryza sativa ssp. japonica)

Overview

Gene Identifier: LOC_Os06g11140
Transcript Identifier: LOC_Os06g11140.1
Gene Type: Coding gene
Location: Chr6 : 5840299-5844423 : negative

Family

Gene family: HOM04M000058
(1253 genes in 29 species)
specific family
Subfamily: ORTHO04M007166
(34 genes in 29 species)
specific family

Descriptions

Description: pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed

Identifiers

Type	Value
id	LOC_Os06g11140.MSUv7.0
pacid	33144742
tid	LOC_Os06g11140.1.MSUv7.0
tid	LOC_Os06g11140.1
RAP	Os06g0214900

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

Create

...a custom phylogenetic tree using this gene as seed.

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...all colinear gene pairs.

Browse

...the gene in IGV.js, a genome browser

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0008152	IEA	PLAZA Homology (enrichment)	metabolic process
GO:0042372	IEA	PLAZA Integrative Orthology	phylloquinone biosynthetic process	AT5G08740
GO:0071482	IEA	PLAZA Integrative Orthology	cellular response to light stimulus	AT5G08740

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016491	IEA	InterPro	oxidoreductase activity
GO:0016787	IEA	PLAZA Homology (enrichment)	hydrolase activity
GO:0003955	IEA	PLAZA Integrative Orthology	NAD(P)H dehydrogenase (quinone) activity	AT5G08740

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009536	RCA	Gene Ontology	plastid	GR_REF:7047
GO:0010287	IEA	PLAZA Integrative Orthology	plastoglobule	AT5G08740
GO:0031304	IEA	PLAZA Integrative Orthology	intrinsic component of mitochondrial inner membrane	AT5G08740
GO:0009534	IEA	PLAZA Integrative Orthology	chloroplast thylakoid	AT5G08740
GO:0005618	IEA	PLAZA Integrative Orthology	cell wall	AT5G08740
GO:0005739	IEA	PLAZA Integrative Orthology	mitochondrion	AT5G08740
GO:0009507	IEA	PLAZA Integrative Orthology	chloroplast	AT5G08740

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR023753	FAD/NAD(P)-binding domain

Mapman id	Description
2.4.2.1.3	.Cellular respiration.oxidative phosphorylation.alternative NAD(P)H dehydrogenase activities.type-II NAD(P)H dehydrogenase activities.NAD(P)H dehydrogenase (NDC)

No SignalP domains detected for this gene.